Treponema pallidum subsp. pallidum Chicago: TPChic_1028
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Entry
TPChic_1028 CDS
T01868
Symbol
pcrA
Name
(GenBank) ATP-dependent helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tph
Treponema pallidum subsp. pallidum Chicago
Pathway
tph03420
Nucleotide excision repair
tph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPChic_1028 (pcrA)
03430 Mismatch repair
TPChic_1028 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tph03400
]
TPChic_1028 (pcrA)
Enzymes [BR:
tph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPChic_1028 (pcrA)
DNA repair and recombination proteins [BR:
tph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TPChic_1028 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
TPChic_1028 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HXXSHH
AAA_11
AAA_12
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADD73123
LinkDB
All DBs
Position
complement(1122297..1124354)
Genome browser
AA seq
685 aa
AA seq
DB search
MALGAVRQFSVAGLRVESYLSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLI
RSRQVRPEQILAVTFTNKAAREMRTRACALESAAQGATICTFHALGVWILRRYAVRLGLN
PHFSIYDDHDVRALLPKILPHCDHSRAGMLARGISQAKDYGLDCASFESVHARVSAPACA
ARAVLGDRQFAHAYACYHRRMREMGTVDFGDLIMLPVQLLREHQDVAEQLHARWQVVMVD
EYQDSNVAQFHFLQVLTGAHTYLCVVGDDDQSIYRFRGAEVKNILTFPEFFQNTQIIRLE
YNYRSTDAILRVADSVVKKNQDRLGKALIAQRTGGTKPRLFLLNNQDEEAALCVHLIQEA
RARGIPYADWAILYRVNAQSLSFEQCFLRNRIPYRIVGTLKFYSRAEVKDVLAFLQLIVN
GSDELALRRVLNKPPRGIGEKTQDALFVCAQQAAITDFTTLQSTHLTALGTRARQKVSSF
LSLLRALRARMPQAPAAGEEARTSAPPEEPVEERTHDAEGLARFVSVVMEHTGLEEWYRQ
KDEEEGTQCAVNVQELMNAASLYACSHEGLVSFLEHIQLDQNMADEGGAADAVHLITIHN
TKGLEFRRVILTGLENGVFPRDDEADIQEERRLMYVACTRAMDSLYLTACAYRRMWGRHT
AMKPSRFLTELDSALLEITDPRHFA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtggcactcggtgcggtgcggcagttttcggttgcagggctgcgcgtggaatcctacctg
agcgcgctcaatgaggcgcagcgtcaggccgtttgccattatggcagcccgcttcttatc
cttgccggcgcaggctcaggaaagacgcgcgttatcaccaccaaaatcgcccatcttatc
cgttcccggcaggttcgccccgagcagattctggcagtaacctttaccaataaagcggcg
cgtgagatgcgcacgcgtgcctgcgcgcttgagtctgccgcgcagggggcaactatctgt
accttccacgcactgggggtgtggatcctgcgtcgctatgcagtccgtctgggattgaac
ccccattttagtatttatgacgaccatgacgtccgtgcactcttgccaaaaatcctgcct
cattgcgatcacagtcgggcaggcatgctcgcgcgtggaatttctcaggcaaaggactat
gggctcgactgcgcctcgtttgagtcagtgcacgcgcgtgtctccgctcctgcatgcgct
gccagagccgttctgggtgacaggcagtttgcgcacgcatatgcgtgctaccatcggcgt
atgcgcgaaatgggaacggtagactttggggatctgattatgcttccggtgcagctcttg
cgtgagcaccaggacgtcgccgaacagctgcatgcacggtggcaggtggtcatggtagat
gagtatcaagactcaaacgtggcgcagtttcatttcttgcaggtgctcaccggtgcgcac
acctatctttgtgtggtaggggacgacgatcagtccatctatcgctttcgcggagcagag
gtaaaaaatatcttgaccttccctgagttctttcaaaatacccagattatccgcctggag
tacaactaccggtccacagacgcaattctgcgtgttgctgattcggtagtgaaaaaaaac
caagaccgcttaggaaaggcgctgattgcccagcgcacgggaggtactaagccgcgcctg
ttcttgctgaataatcaagatgaagaagctgcgctgtgcgtgcacctcattcaagaagcg
cgtgcgcgcggcatcccatacgcggattgggcgattttatatcgggtaaatgcacagtcg
ctgagttttgaacagtgttttttgcggaatcgcattccgtatcgcattgtcggcacgctc
aaattctacagtcgcgcagaggtaaaagacgtgctggcgtttctccagctcatagtcaat
ggctcagatgaactggccctccggcgggtgctgaataagccgcctcggggcattggagaa
aagacacaagacgcattgtttgtctgtgcacagcaggcagccataactgattttaccaca
ctccagtccacccacctgaccgcgcttggcacgcgtgcgcggcaaaaggtcagtagcttt
ctgtcgctgttacgtgcgctgcgtgcacgcatgccacaggcccccgcagcgggagaagaa
gctcgcaccagtgcgccgcctgaggagccggtagaggagcgcacccacgatgcagaagga
cttgcgcgctttgtttctgtggtaatggaacacacggggctggaagaatggtatcgacag
aaggatgaggaagaagggacgcagtgcgcggtcaacgtgcaggagttaatgaacgcagcg
tcactgtatgcatgttcgcatgaggggttagtgagtttcctagaacacatccaattggac
caaaatatggccgacgagggaggagcggctgacgcagtgcacttgatcaccattcacaat
acaaaagggctggagtttcgacgggtgattctgaccggactagagaacggggtgtttccg
cgtgatgacgaagcagatatacaggaagagcggcgtttgatgtacgttgcctgcacgcgg
gctatggatagcttataccttaccgcgtgtgcgtaccgcagaatgtggggacgacacacg
gcgatgaagcccagccgctttttgaccgagcttgactccgcgctgttagaaataaccgat
ccgcgacactttgcctaa
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