Treponema phagedenis: FUT81_04285
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Entry
FUT81_04285 CDS
T06342
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tphg
Treponema phagedenis
Pathway
tphg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FUT81_04285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tphg03019
]
FUT81_04285
03009 Ribosome biogenesis [BR:
tphg03009
]
FUT81_04285
Enzymes [BR:
tphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FUT81_04285
Messenger RNA biogenesis [BR:
tphg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FUT81_04285
Ribosome biogenesis [BR:
tphg03009
]
Prokaryotic type
rRNA helicases
FUT81_04285
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QEK08739
LinkDB
All DBs
Position
complement(943809..945665)
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AA seq
618 aa
AA seq
DB search
MELSFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGL
PLIQELRADLGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRTLK
KGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNARI
LMFSATMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFVREEDKIEALIRLIDIT
PDFYGLVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTLVATD
VAARGIDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDYLARH
ARGEFKEGKIPSIEKVLAYKETRILSELGEKLAKLETDDFNESFIRFSEKLLAGTAEKSE
NDVSLADENISEEITDMQNSEHDFEKRYNDKTEKQIIQILAGLLQLQFGAQLSPSRYKNI
KPVRFDGGKKQKDSDQCRLYLALGRKEGMTKRKISQLFSSLLSIPEHKVDRIEVMEKFSL
VSLPRQAAATALSLAKKRKDLPLRLDKKESEERESFPARKKSGRKQREERRMETFVKEKT
AKKKRSPSTAKASAYKKR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaattatcttttaaagacatcggcttagaggacatcgttctccaagcaattgaagca
aagggttttgaaaccccaactcccattcagattttggcaattccccgattgctttcggga
gagacaaatattattgcaaaggcgcgcaccggtaccggaaaaacaggcgcttttggctta
ccacttattcaggaattgcgtgcagatttaggacatccgcgcgccctcgtacttgtgccg
actcgtgaacttgccatgcaggttgcggcagaaatagaatcctttagaattgaaacctat
ccccgaatcgctgttgtctatggcggttcttcaatgagcgaacaattacgcactttgaaa
aaaggggctgaaattatcgtaggaacaccgggacgaattattgaccacattgagcgcggc
tcgcttgatcttacgcaaattgaatattttattttggacgaagcggatgaaatgcttaat
atgggatttatcagcgatatagaaactatattttcaaaagcaaattccaatgcgcgcatt
ttaatgttttccgccaccatgcccaaacctattctttcgatagcctcggattttatggga
gattatgaaattgttgcggaagaattatccgaagagcctgtttcgctcaccgagcagttt
tattggtttgtgcgcgaagaagataaaatcgaagcacttatacggctcatcgatattaca
ccggatttttacggcttggtattttgccaaacaaaacttgatgcggattcggttgcaaaa
gaattggaagagcgcggatatgaagcggctgccttgcacggcgacattccgcaaaatcag
cgggaaaaaattctttcccgattcagatcaaaaaaaatacgcacgcttgttgcaaccgat
gttgccgcacgcggaattgacatcgaaggaattacccacgtggtcaattatgcaattccc
tatgacggcccgacctatacacacagaataggcagaaccggacgcgcaggctcgacagga
acagcggtaagttttattcgtccgaatgaaagcagaaaaatcgactatcttgcccgtcat
gcccgcggcgaattcaaagaaggaaaaattccttcaatagaaaaagttcttgcatacaaa
gaaacgcgtatcctttccgaattgggcgaaaagcttgcaaaacttgaaaccgatgacttc
aacgaatcgttcatacggttttcagaaaaacttttagccggcaccgctgaaaaatcagaa
aacgatgtttcccttgccgatgaaaatatcagtgaagaaataaccgatatgcaaaattct
gaacatgattttgaaaaacgttataatgacaaaactgaaaaacagattatccaaattctt
gccggtttgctgcaactacaattcggcgcgcagctttcaccatctcggtataaaaatata
aagccggtgcgttttgacggcggaaaaaaacaaaaagattcagaccaatgccgcttatat
cttgccttaggcagaaaagaaggcatgacaaaacgaaagatatctcagcttttttcttct
ttgctttccatccccgaacataaggttgatcgaatcgaagtgatggaaaagttttcattg
gtaagtttaccgcgacaagctgccgcaacagcactcagccttgcaaaaaaaagaaaagac
cttcccctgcgccttgacaaaaaagaaagcgaagaacgggaaagttttcctgcaagaaaa
aaatcgggaaggaagcaacgggaagagcgccgcatggaaacatttgtcaaggaaaaaaca
gcaaagaaaaaacgcagcccctcaaccgcaaaagcatccgcctataaaaaacgctga
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