Treponema phagedenis: FUT81_08810
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Entry
FUT81_08810 CDS
T06342
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tphg
Treponema phagedenis
Pathway
tphg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FUT81_08810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tphg03021
]
FUT81_08810 (rpoC)
03400 DNA repair and recombination proteins [BR:
tphg03400
]
FUT81_08810 (rpoC)
Enzymes [BR:
tphg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FUT81_08810 (rpoC)
Transcription machinery [BR:
tphg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FUT81_08810 (rpoC)
DNA repair and recombination proteins [BR:
tphg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FUT81_08810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QEK09524
LinkDB
All DBs
Position
complement(1960796..1965088)
Genome browser
AA seq
1430 aa
AA seq
DB search
MRDIQDFDSLKMKLASPETIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWEC
FCGKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDL
QVAALRSVLYYEKYIVIEPGDTDLKKNQLLTEDEYSGAQERYGGGFTAGMGAEAIKTLLQ
NLNLDELAAELRVKMIEKGAKSDKRLLRRIELVENFRVSGNKPEWMILNVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLTRLMDLKAPDIIIRNEKRMLQEAVDALFDNSK
RKPAIKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVEKEIVSNIKKAKILVEQESPKVFNVLDEVVSEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLL
DPANGKTIVYPSQDMVLGLFYLTKAHNLKEGELPRRFSSVDEVMMAAENGVIGWQQQIQV
RYKKCNNELVTTTPGRLVFNEEMPEEIPFVNDLLDDKRIRSLIETVFAKQGSWLAVQMLD
KLKSVGYKYATFFGATLSMDDIIIPDQKTEMLEKANKEVLSIYNQYRGGHITQEERYNRV
VEVWSKTNEKLTDLMMETLSNDKDGFNTINMMVASGARGSKNQVRQLAGMRGLMAKSNGD
IIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTSEAGYLTRRLVDIAQDVVVNEED
CGTINGIDYRAVKSGDEIIESLAERIVGKYTLERVVHPITHELLIDVNEYITDEIAEKIE
EAGVESLKLRTVLTCESKHGVCVKCYGRNLARNKIVEIGEAVGIIAAQSIGQPGTQLTMR
TFQVGGTASSTTEENRISFKYPIIAKDIQGTNVKLENGSMLFTRRGYLIFEKVLAEYELD
EGAEALVKDNARVLKGDSVYKSSNQETVLAEINGFARIIDSTIYLVGTEQKAEIRNGSEV
SIKIGGYIPAGATIAIFDPFNDPILAEQDGFVRYEDIIPGSTVSEDINEETGVIERHITE
LKTDTQLQPRVFISDESGNALGFYYLPGGAQLMVEEGKQIKAGSVIARIAKAAVKTLDIT
GGLPRVSELFEARRPKNPAVLAQVSGTVAFKGLLKGKRIIIVRDYYGKDYKHFVPMGKRL
LVRDGDTVEAGERLCDGNLDPHDILAILGENALQNYLMNEIRDVYRVQGVSINDKHIGII
VRQMLRKIEVVSVGDTRFIYEQQVDKYRFHEENKRVQAEGGQSAVARPMFQGITKAALNI
DSFISAASFQETNKVLTNAAIAGAVDNLRGLKENVIIGHPIPAGTGMKQYRSIKLFDKNK
SDLDLQMEEIIKRRKLEEEALAQMSASNIDFDSDNEADADSDFDDEKNNE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgagggatatacaagactttgacagtttaaaaatgaaacttgcttctcctgaaaccatt
cgagcatggtcttacggagaagtaaaaaaaccggaaactatcaattatcgtacactacgg
cccgaacgagacgggcttttttgtgaacgtattttcggtacaacaaaagaatgggaatgt
ttttgcggaaaatttaaatcaatccgatataagggagtaatctgcgatcgctgcggtgtt
gaagttactcactttaaggtgcgccgcgagcggatggggcatattgaattggctgctcct
gtttctcatatttggtattaccgctcggtgccgagcagaatgggacttttgcttgatttg
caagtggctgcactccgttccgtactctattatgaaaaatacattgtaattgagccgggc
gataccgaccttaaaaagaaccagctgctcaccgaagacgaatatagcggcgcccaggaa
cgatacggcggaggctttactgccggaatgggagcagaagctattaaaactttgctgcaa
aaccttaaccttgatgagcttgcggcggaacttcgggtaaaaatgatcgaaaagggcgca
aaaagcgataagcgtcttttacgaagaattgagcttgttgaaaatttcagagtttctggc
aacaagcccgagtggatgatcttaaatgttattccggttattccgcccgatttgcgcccg
atggtacagcttgacggcgggcgctttgcaacctcagacttaaacgatctttatcgtcgc
gtaatacatcggaacagccgcttaaccagattaatggatctcaaagcgcccgatatcatt
atccgcaatgaaaagcgtatgttgcaagaagcggttgacgcgctttttgataactcaaag
cgaaaacctgcgataaagggtgcctccaaccgtccgctgaaatccatttcggatatgctg
aaaggaaagcagggacgtttccgccaaaacctgctcggaaaacgtgttgactattccggt
cgctcggttattgttgtcggtccagaattaaaactttggcaatgcggacttcccaccaaa
atggcgcttgaattgtttaagccctttattatgaaaaaattagtggaaaaagagattgtt
tccaatattaaaaaggcaaaaattctggttgagcaagaatctccgaaggtatttaacgta
ctggatgaggttgtcagcgagcatccggttatgcttaaccgcgctcctaccttgcaccgg
ctcggaattcaagcgtttgaacccgtgttagtagaaggaaaagcgattaagctgcatccg
cttgtatgtaagccgtttaatgccgactttgacggggaccagatggctattcacgtgccg
cttacgcaggcagcgcaaatggaatgctggacgctcatgctttccagcagaaacctgctt
gaccccgcgaacggaaaaacgattgtttatccgtcgcaggacatggttttaggtttgttt
tatctgaccaaagcacataatttaaaagaaggcgagctgccgcgaagattttcatcggtt
gatgaggttatgatggctgcggaaaacggtgtaattggctggcaacaacaaattcaagtt
agatacaaaaaatgcaataatgaacttgttaccaccactcccggtcgtcttgtttttaat
gaagaaatgcctgaggagatcccttttgtaaatgatctccttgatgataaaagaattaga
agccttattgaaacagtgtttgcaaaacagggctcatggcttgcagtgcaaatgcttgat
aaattaaaatccgtcggttataaatacgcaacattcttcggtgcaacattgagtatggat
gatattattatccccgatcaaaaaaccgaaatgcttgaaaaggcaaacaaagaagttctt
tctatttataaccaatatcgaggcggtcatattactcaggaagagcggtataaccgtgtt
gttgaggtttggtcaaaaacaaacgaaaaactgaccgacctcatgatggaaaccctttct
aatgataaagacggttttaacaccattaatatgatggttgcatcgggcgcgcgaggaagt
aagaaccaggttcgccagcttgcggggatgcgcggacttatggcaaaatcaaacggtgat
atcattgagttgcccatccgatcaaactttaaagaaggtttgaatgttatcgaattcttt
atctctactaacggagcgcgaaaaggtttggctgatacggctctaaaaacctcagaagca
ggttaccttactagacgcttggttgatattgctcaagatgtggtagtaaatgaagaagat
tgcggtaccattaacggaattgattatcgagctgttaaatccggtgatgagattatcgaa
tctcttgcggagcggattgtcggaaaatacacgcttgagcgggtagtgcacccgattacg
catgaactgcttattgacgtcaacgaatacataaccgatgaaattgctgaaaaaattgaa
gaagcgggagttgaatctctaaagttacgtacagttttaacctgcgaatccaaacatgga
gtgtgcgtaaaatgttacggcagaaacttggcacggaataaaatcgttgaaataggtgag
gcggtcggaattattgccgcacagtctatcggacagccgggaacgcagctgacgatgcgt
acgttccaggttggaggtaccgcaagcagtacaacggaagaaaacagaattagctttaaa
tacccgattattgcaaaagatattcagggaacaaatgttaaattggaaaacggctctatg
ctctttacacgacgcgggtaccttatttttgaaaaagttttagcggaatatgaacttgat
gagggagcggaagctcttgtaaaagataacgcacgagttttaaaaggtgattcggtgtac
aaatcctcgaatcaagaaactgttttagcggaaataaacggttttgcgcgaataatagat
tcaacaatttatttagtaggaaccgagcaaaaagccgaaatacgaaacggatcggaagta
tcaataaaaatcggtggctatattcctgccggagcaacaattgcgatatttgatccgttt
aacgatcctattttggcagaacaggacggctttgtccgctatgaggatattattccgggc
tcaaccgtatctgaagatataaacgaagaaaccggtgttattgaacgccatattactgag
ctcaaaacggatacccagttgcagcctcgagtatttatttcagatgaatccggaaacgcg
ctcgggttttactatttacccggtggtgcgcagctcatggttgaagaaggtaagcaaatt
aaagcgggttcggttattgcaaggattgcaaaggccgcggtaaaaaccttggacataacc
ggtggtttgccacgggtttccgaattgtttgaagcaagaagaccgaaaaaccctgccgtt
ttggcacaggtaagcggtactgttgcttttaagggcttactgaaaggtaagcgcataata
atcgtgcgcgattactacggaaaggactacaagcattttgtaccgatgggaaaacgtctt
ttggtacgggacggcgatacggttgaagccggagagcgactctgcgacgggaatcttgac
ccgcacgacattttggcaattttaggcgagaatgcgctgcaaaactatttgatgaacgaa
atcagagacgtataccgcgttcagggagtatcgattaacgacaaacatatcggtattatc
gtgcggcaaatgttgcgcaaaatcgaagttgtctccgtaggcgatactcggtttatttat
gagcagcaagttgataaataccgattccatgaagaaaacaaacgtgtacaagcggaaggc
ggtcaatctgcggttgctcgccctatgttccaaggtattacaaaagcagcactcaatatt
gattcctttatttccgccgcctcattccaggaaacaaataaggttcttaccaatgcggca
attgcgggggcggttgacaatctgcgcggattaaaagagaatgttattatcggacatccg
attccggcagggacagggatgaagcaatataggagcattaagcttttcgataaaaacaaa
agcgacttggatctccaaatggaagaaattatcaagcgaagaaagcttgaagaagaagca
cttgcacaaatgtcggcgtcaaatattgattttgattcggataacgaagcagacgctgat
tccgactttgatgatgaaaaaaacaacgagtaa
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