Treponema phagedenis: FUT81_10385
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Entry
FUT81_10385 CDS
T06342
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tphg
Treponema phagedenis
Pathway
tphg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FUT81_10385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tphg03019
]
FUT81_10385
Enzymes [BR:
tphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FUT81_10385
Messenger RNA biogenesis [BR:
tphg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FUT81_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEK09803
LinkDB
All DBs
Position
2324756..2326375
Genome browser
AA seq
539 aa
AA seq
DB search
MKFTELNLDHSLQQGINDAGYEECTPVQKEVLEKAFSNADLYVQSQTGTGKTAAYLIPIL
QRMLSEPAAQKKTALIMVPTRELAVQIEEECAKLAKHTGITAASFYGGVGYEKQTKSLKE
GAQILIGTPGRVIDLQKSGTMKLDTVGFLVVDEADRMFDMGFYPDLRTLLQVLPKAEERQ
TMLFSATLNTWVKNLAWEYTENAQEISIDSDVITVEEIDQKVFHVSSDAKMQLLLGILAR
EKPENLIIFCNTKKSVEIVAKRLGVNNHICEFLNGDLPQHTRQAIINKFKTGKINCVVAT
DVAARGIDINNLEMVINYDLPNESENYVHRIGRTARAGKSGKAYSLCSEKDAYNLPEIEK
FIEAQIPAEVPEASLFIEDKSSSMYIRLGTEKPHRPRKNNVAELRPRKGRKDKKKKPFSE
GKKERPTKQPKGKNKNEQELLEQMAFEDRMKYYQSKYAKNEGAENTRNKENQKTQKRKSA
SKKKQTLETPPKKQRAKQKTQADVPKKTANLYALEEKIIEEGKQQGGKLKSFFRSLFGK
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagaattaaatcttgatcattccttgcagcaagggataaatgatgcggga
tatgaagagtgtacaccggtacagaaggaagtattagaaaaagcttttagcaatgccgat
ctttatgtccaatctcagacaggaacgggaaaaacggccgcatacctgattcctatttta
caacgaatgctcagtgagccggcggcgcaaaagaaaacagcgttgattatggttcctacg
cgggagcttgccgtgcaaatagaagaagagtgcgcaaaactcgcgaagcataccggcatc
acggcagcaagtttttacggcggggtcgggtatgaaaagcaaacaaagagtttaaaagag
ggagcgcagattctgatcggcacccccggcagagtaattgatttgcaaaaatccggtact
atgaagcttgatacggtaggttttttggttgttgacgaagccgatagaatgtttgatatg
gggttttatccggatttgcgaactttgttgcaggttttgccaaaggcggaggagcggcaa
acaatgcttttcagcgcaacgctgaatacctgggttaaaaatcttgcttgggagtacacc
gagaatgcgcaagaaatcagtatcgacagcgatgtgattacggttgaagagattgaccaa
aaagtgttccatgtttcaagcgatgcaaaaatgcagcttttacttggaattttagcacgg
gagaagcccgaaaatcttattattttttgtaacaccaaaaagtcggtggagattgttgct
aaacggcttggagttaataatcatatatgtgaattcctcaacggagatctaccgcagcat
acgcggcaggcgattatcaacaaattcaaaaccggtaaaattaactgtgtggtggcaacc
gatgtggctgctcgcggtattgatataaataatcttgaaatggtgatcaactatgatctt
ccaaatgaaagtgaaaactatgtgcaccgaatcggaagaacagcacgagcggggaaatca
ggcaaggcatacagtctttgcagcgaaaaagacgcgtataatcttccggaaattgaaaaa
tttatagaggctcaaataccggcagaggttcctgaagcaagtctttttatagaggataaa
agcagcagtatgtatattcgtttaggaacagaaaaacctcatcgtccccgcaaaaataac
gttgcggaattgcgcccacgaaaaggaagaaaagataaaaagaaaaagcctttttccgaa
ggcaaaaaagagcggccgacaaagcagccaaagggtaaaaacaagaatgagcaggagctt
ttagagcagatggcttttgaagaccgcatgaagtattatcagtcaaagtatgcaaaaaac
gaaggggcggaaaatacgcggaataaagaaaatcaaaaaacacaaaagagaaaatccgcc
tcaaagaaaaagcagacgcttgaaacgccgccgaaaaagcagcgggcaaagcaaaaaact
caagccgatgtgccgaaaaaaacagcgaatctctatgctttagaagaaaaaattattgaa
gaagggaaacagcaaggcggcaagttaaaaagctttttcagatccctttttggaaaataa
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