Treponema phagedenis: FUT81_11725
Help
Entry
FUT81_11725 CDS
T06342
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tphg
Treponema phagedenis
Pathway
tphg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tphg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FUT81_11725 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tphg03021
]
FUT81_11725 (rpoD)
Transcription machinery [BR:
tphg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FUT81_11725 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
FGAR-AT_linker
Sigma70_r4_2
FAM176
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
QEK10033
LinkDB
All DBs
Position
2612976..2614790
Genome browser
AA seq
604 aa
AA seq
DB search
MTNIAGNPIFTELLVYAKEKKSITWDEIYKFLPDGMAVSEDLMDEIAEFLTQKKIYILSN
NEDENEIDFDQNEEELDYESEEFENEDESGEEKEETQKRLLVNTKDSLIDDPIKLYLRDI
GQERLLTAKQEVILSKRMEDGENIIKDVIQNSGILIPEFYQIGKNISKKAFAVIDPAEQN
KPRKELSEEIVDKRRLKQAYGDSLKTVFSEIKQYMAAKKHLDDRGEPIATFIEDPAAIKQ
RKKLLNNLQKIELQSEELDRFSKKFLDTAKKIKEFRRKKERCEKQLMISDLSDMRKIGRS
LAIPRQRAKLEDELGMSSDEIQEIYTQIQKITRRLRKIEYDFENNIDDIIVMAREIHRGH
TMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFST
YATWWIRQAITRSIADQARTIRVPVHMIEQINKVARESRQLLQKLGRDPTDEEIATQLCW
TVEKVKQVKNVAREPISLETPIGEEEDSSLGDFIPDTEIENPSNVTEKILLREEVQSVLS
TLPSREHEVLKMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALRRLRHPRHSRRLKD
FLDN
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatattgcgggaaatcctatttttacggaattgttggtttacgcaaaagaaaaa
aaatcaatcacttgggatgaaatatataagtttttgcctgacggaatggcagtgtccgaa
gacttgatggacgagattgccgagtttttaacgcaaaagaagatctatatcctctccaat
aatgaggacgaaaacgaaattgactttgatcaaaatgaagaagaacttgattatgagtct
gaagagtttgaaaacgaggatgaatccggagaagaaaaagaggaaacacagaagagactg
cttgtaaatacaaaagactcactaatagacgatccgattaaactatatttacgcgatatc
gggcaagagcgattacttaccgcaaaacaagaagtcatcctttcaaaaagaatggaagac
ggagaaaatatcattaaagacgttattcaaaattctggaattcttattccggaattttat
caaatcggtaaaaatatttctaaaaaggcctttgcagtcatagatcccgccgagcaaaac
aagccgcgcaaagaattaagcgaagagattgttgataagcgccgattaaagcaagcgtat
ggcgattctttaaaaactgttttttcggaaattaaacagtatatggcggcaaaaaaacat
ttagacgaccgcggagaaccgattgcaacctttattgaagaccctgccgcaataaaacag
aggaaaaagctcttaaataatttgcaaaaaatagaattgcaatccgaagagctggatcga
ttttctaaaaaatttcttgataccgcaaaaaaaataaaagaatttcgaagaaaaaaagag
cgatgcgaaaaacaattaatgatttcagatttaagcgacatgcgaaaaatcggcaggagt
cttgcaattcctcgtcaacgggcaaagcttgaagatgagcttggtatgtcttccgacgaa
attcaggaaatttacactcaaattcaaaaaattactcgaagattgcgaaaaattgagtat
gattttgagaataacattgatgatattattgtaatggcgcgggaaatccatcgcggtcat
acaatgctcaaaaaagcaaaagataaacttatcaatgcaaacctcagacttgttgtatca
attgcaaaaaagtatactaacagagggttgctcttttttgatcttgtacaagaaggtaat
atcggacttattaaagcggtagaaaaattcgagtatcggaaagggtataaattttctacg
tatgcaacttggtggatcaggcaggcaattacccgctctattgccgaccaagcaagaacg
attcgtgtacccgtccatatgattgaacaaatcaataaggttgctcgggaatcccgtcag
cttttacaaaaactcggcagggatccaaccgatgaagaaattgcaacgcaactttgctgg
acggtagaaaaagtaaaacaagtaaaaaatgttgcacgggaacctatttcgcttgaaacc
ccaatcggagaagaagaagattcttctctcggagacttcatccccgatacggagatagaa
aatccttcaaatgttacggaaaaaattcttttacgagaagaagtgcaatccgtactttca
accttaccgagcagagagcacgaagtgttaaaaatgcgtttcgggcttgacggtgattac
tctcaaacattggaagaagtgggtttatactttgatgttacgcgggagcgcattcgacag
atagaagcaaaagccttacgcagactgcgtcatccgagacatagtcgcagattaaaagat
tttttagataactaa
DBGET
integrated database retrieval system
