Treponema primitia: TREPR_1001
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Entry
TREPR_1001 CDS
T01507
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpi
Treponema primitia
Pathway
tpi03410
Base excision repair
tpi03430
Mismatch repair
tpi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TREPR_1001 (recJ)
03430 Mismatch repair
TREPR_1001 (recJ)
03440 Homologous recombination
TREPR_1001 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpi03400
]
TREPR_1001 (recJ)
DNA repair and recombination proteins [BR:
tpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TREPR_1001 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TREPR_1001 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TREPR_1001 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AEF83651
UniProt:
F5YHS1
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All DBs
Position
3326382..3328526
Genome browser
AA seq
714 aa
AA seq
DB search
MNWEKKSIPPELVKELSERYGCDFLTASVLARRGITGGEDIRYFLEDDPRHLRNPFELPG
MEAAVERILGAKEEGEKVLVFGDRDVDGITSTAMVSSFLTGQGIDLRWRLPQGDEPYGLS
MKAVEEFAADGGTLIITVDCGISNLEEVEKANELGIDVIITDHHNPQEELPQAYTIVNPK
LKNSAYPFRDLAGCGVAYKLVSALRFALKSHFFAQPVCLLNTRPSNDSYIIEIVKLRNLA
ETDRLIETVVPGMVGITETRLPAFLEGQQILAWDVALQKKTLAKIFGSGFEIYMLDLAPE
VAKQIPQTGGKSLLRLKEISRIAKYAENSPGELDIFVNLFTSFVQKKEGHFTPEDSADLQ
LAALGTIADIMPLRDENRIIVRRGLASMLEKPRPGLSDLLFKLGLSGRRFGTSEMSWQLC
PPINATGRMGCPDKAAALLLADDPAERDRLAGEIVALNEDRKKLGAENWAVVEPLARESL
ERLGGKFVLAAGEGIYRGVTGIMANRLVNQFKVPALVAAFGEETLSGSLRSARGYDLTSL
MEQNADLFLDWGGHDFAAGFSMVRANWEPFLERLGSITANLELGEETDEETLSVDAEFDA
PRVGKFLTPELFGLVDRFEPYGEENVALSFLARGLKITDIQLMGKPEAKHVKLTLDTGKH
KWPAMYWQAVDKVNRDFALNDRVDLVFTLNRNWFNGTETPQLIVTDLKRAASGD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaattgggaaaagaaaagcatacccccggaactggtaaaggaactctctgagcgctac
ggctgcgactttttaaccgcctccgttctggcgcgccgggggattaccgggggcgaagac
atacggtactttcttgaggacgatccccggcatctgcgaaacccctttgagctgcccggc
atggaagctgcggtggaacgcatcctgggcgcaaaggaagagggcgaaaaggtgttggtc
ttcggcgaccgggacgtggacggcatcaccagtacggccatggtcagctcttttttgacc
ggacagggcatagacctgagatggcggcttccccagggggatgagccctacggcctttcc
atgaaggcggtggaggaatttgccgcagacgggggcaccctgattatcaccgtggattgc
ggcatctcgaaccttgaggaagttgaaaaggccaatgagttgggcattgatgtgatcatc
acggaccatcataaccctcaggaagaacttccccaggcgtataccatcgtgaacccgaaa
ctgaaaaattccgcctaccctttccgggacctggcgggctgcggggtggcctataaactg
gtatccgccctgcgcttcgccctaaaaagccatttcttcgcccagcccgtatgcctcctc
aacacccggccctccaacgattcctacatcatcgaaatagtaaaactgcggaaccttgcg
gagacagaccggctcatagaaacagtagtgcccggtatggtggggatcaccgaaacccgg
ctgcccgcctttctggaaggccagcagatcctggcctgggatgtggccttgcaaaaaaag
accctggcaaaaatcttcggctccggttttgaaatttatatgcttgacctggccccggaa
gtggcaaaacagataccccaaaccgggggaaagagcctgctccggctgaaggaaatttcc
cggatcgccaaatacgcggaaaattctcccggggagctggatatctttgttaacctcttc
acttcctttgtacagaaaaaggagggccacttcacccccgaggacagcgcggacctccag
ctcgccgccctgggaaccatcgcggacatcatgcccctgcgtgatgaaaaccgcatcata
gtccgccggggcctggcctccatgctggaaaagccccggccggggctttcggacctgctg
ttcaaactgggcctttctgggcggcgcttcgggaccagcgaaatgtcctggcagctctgc
ccgcccatcaacgccaccggccgcatgggctgccctgataaggccgcagcattactgctg
gcggatgacccggcggaacgggaccggctagctggggaaatcgtcgccctgaacgaggac
cggaaaaagctgggcgccgaaaactgggccgtggtggagcccctggcccgggaaagcctg
gaacgcttggggggcaaatttgtcctcgctgccggagaaggcatctaccggggggtcacg
gggatcatggcaaaccgcctggtgaaccagtttaaggtccccgccctggtggcagccttt
ggcgaagaaaccctctcaggctccctccgatccgctcggggctacgaccttacctctctt
atggaacaaaacgcggacctcttcctcgactgggggggccacgactttgccgcagggttc
agcatggtacgggccaactgggaaccctttctggagcgccttgggagcatcaccgcaaat
ttggaattaggggaagagaccgatgaggaaaccctttcggtggatgcggaattcgacgcc
cccagggtgggaaaattcctgacaccggaactgttcggcctggttgaccgctttgaaccc
tacggcgaagaaaacgttgcccttagcttcctggcccggggtctcaagataacggacatc
cagctcatgggaaagcccgaagccaaacacgtcaagctcactctggatacgggaaagcac
aagtggcccgctatgtactggcaggcggtggataaggtgaaccgggacttcgccctgaat
gaccgggtagatttagtgttcaccctgaaccggaactggtttaatgggaccgagacgccc
cagctgattgtgacagatttgaagcgggcggcttccggggactga
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