Treponema primitia: TREPR_1182
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Entry
TREPR_1182 CDS
T01507
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpi
Treponema primitia
Pathway
tpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREPR_1182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpi03019
]
TREPR_1182
03400 DNA repair and recombination proteins [BR:
tpi03400
]
TREPR_1182
Enzymes [BR:
tpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TREPR_1182
Messenger RNA biogenesis [BR:
tpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TREPR_1182
DNA repair and recombination proteins [BR:
tpi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TREPR_1182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Helicase_C_2
Glyco_hydro_57
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF86610
UniProt:
F5YGU6
LinkDB
All DBs
Position
3135904..3137610
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AA seq
568 aa
AA seq
DB search
MQEDGSTNLISREPMADAEIPDPVTLAVTKLFGLSYLFPYQRLVVTNILEAAEAAGVPVH
WPENSRESARENPLPAGTDSEESPEGTKVAPGETGVSIDETDVSADETDRAAMGRQIVIL
PTGAGKSLCFQLPAMLLEGPTLVIYPILSLMADQERRLQERGFAPVILRGGQSREEREAI
WQKVETGESRFIIANPEVLLTPRVMEKLGTLGIVHVVIDEAHTVSEWGESFRPSYLRIGE
IIQAASAKSNTDSAPGLPMVTAFTATASSPVLNNIRKYIFGETEAHSIIGNPDRSNISYT
AQGCMLRNLAVRDLLILNQRPAIVFCSSRNGTEKLARYLQNELGELDLPWAREIRFYHAG
LSREEKTEVEKWFFKNPEAVLLATCAYGMGVDKADIRTVIHRDCPPSVEAYLQESGRAGR
DGLPSKAVLLWGPDDDLALKRARNEADKQRLEALFRYARDTGGCRRETLLALLNYEGSGE
KPESDCCDVCNGEAQGELREEESLLSFFRRNRRSYTREEAIPVLVRAEGVRWSEENVKNA
IGRLLRTGALKKSKYFPWKNKLTVPRKR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaagacggatcaacaaatctaatctcccgggaacctatggcagacgccgaaatc
cccgatcccgtaaccctggcggttacaaaactcttcggcctgtcctatctgttcccctac
cagcggctggtggtgacgaatatccttgaggcggcggaagctgcgggggtcccggtccat
tggccggaaaactcccgggagagcgccagggaaaacccacttcctgcgggcacagactca
gaggaaagcccagagggcaccaaagttgctccaggcgaaaccggagtgtcaatagatgag
acagatgtctccgcagacgaaaccgaccgcgccgccatgggccggcagatagtaatactg
cccaccggggcggggaagtccctctgtttccaactgccggcaatgctgctggaagggcca
accctggtgatctaccccatcctgtccctcatggcggatcaggaacggcgtttgcaggaa
cggggctttgcgccggtgatactccggggtggccagagccgggaggaacgggaggctatt
tggcaaaaagtagaaaccggggaaagccggttcatcatcgccaacccggaggtgctgctg
accccgagggtgatggaaaaactgggaaccctgggaatagttcacgtggtgatcgacgag
gctcatactgtaagcgaatggggggaaagtttcaggcccagctatctgcgcatcggggaa
attatccaggccgcctcagcaaagagcaacactgattccgcccccggcctgcccatggta
acagcctttactgccaccgcatcaagcccggtgctgaacaatatccggaagtatatcttc
ggcgagaccgaggcgcacagtattattggcaatcctgaccgcagcaatattagctatact
gctcagggctgcatgctccggaacctggcggtacgggatctgctaatcctgaatcagcgg
ccggcgatagtgttttgctcgtcccggaacgggacggagaagctggcccggtatttgcag
aacgagctgggggaactggatcttccctgggcccgggaaatacggttctaccatgcaggc
ttaagccgggaagaaaagaccgaagtggagaagtggttcttcaaaaacccggaagcagta
ttactggcaacttgcgcttacgggatgggggtggacaaggcggatatcagaaccgtgata
caccgggactgcccgccttcggtggaggcctacctccaggaatcgggccgggccggacgg
gacggtttgccctcaaaggcggtgttgctctgggggcctgacgacgacctggccctgaag
cgggcccggaacgaagcggataagcagcgcttggaggcactgttccggtacgctcgtgat
accggggggtgcaggagggagacactactggcccttctcaactacgaggggagcggggaa
aagcccgaatcggattgctgcgatgtttgtaacggtgaggcccagggggagctgagggag
gaggagagcctgctgagttttttccgcaggaaccgtcgctcctatacacgggaggaggcg
attccggttctggtcagggcagaaggggtgcgctggtcggaagagaacgtcaagaacgct
atagggcgactgctcagaaccggggcattaaaaaagagtaagtattttccctggaagaac
aagctcacggtacccaggaaaagatag
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