Treponema primitia: TREPR_1911
Help
Entry
TREPR_1911 CDS
T01507
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpi
Treponema primitia
Pathway
tpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TREPR_1911 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpi03400
]
TREPR_1911 (mfd)
Enzymes [BR:
tpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TREPR_1911 (mfd)
DNA repair and recombination proteins [BR:
tpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TREPR_1911 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF86715
UniProt:
F5YL26
LinkDB
All DBs
Position
complement(2341678..2345115)
Genome browser
AA seq
1145 aa
AA seq
DB search
MNALSFPSFLKKIVASDAVSRVLDEFKGGKFPLEIEGAEGSFGAILLSALFQTNHDNLLA
VTPSEREAAELATDLETLGVPVALFPWWGTVSYREMAPLSTVFGERTRVLGSLARSIEAG
PGNRGIVVVPERAFLTPLPPPEYIRSLLITLKPGGKIDTIALAETLSGYGYIRVPRVQVH
GEFALRGEVLDILMGGDDSAYRVLFDFDQVESIKRFDPVDQSSLGPGDREKVGELVIRPL
KEVVWSDERIETLSRNLASFPEFANQGRAMLEELMTRRGAGGEELFFPLAFEGGAAALTD
YFAPGAGVCYLERERLENAQESLEREYHSFYTKALREREVPAPERILLKFADLAGRLPRQ
VSFMTIKGNAETEAKRIMVSCDPPRSFFGNINYLKEEFSVLAAQGWELVVAAESETQAGR
LTELFKDEKVTVAAAPLSMGFALPDSKFMLVQENEIFGRRKRPPRSLKQVRSVAIDTFVE
LNPGDFVVHINYGIGLFKGIERIKALGHERDYIKLEYLGEEIVFVPIEQVNLVQRYIGNE
GSPPRMDKLGSKSWENRKGRVKKSVEDIAEKLIELYSKRKASRGFAFPQDSEWQTMFEAA
FPFDETEDQLRCVEEIKDDMESTHPMDRLICGDVGYGKTEVAVRACFKAVMGGKQVAFLA
PTTILAEQHFENFQERFSQFPIRLGMLSRFVDRAAARKTLEAVQKGEIDILVGTHRIIQK
DVSFRDLGLIVIDEEQRFGVKDKERLKELKHNVDCLTLSATPIPRTLHMSLLKIRDMSLL
ATPPNNRHPIETVIGEYNEDRLAAAIRAEVERGGQVFFLHNRVESLNETRIRIEHLAPEM
LVETAHGQMDAQDLEDVMHRFIHGGFHVLVSTTIIENGIDIPNVNTIIIDRADMYGVSQL
YQLRGRVGRSDRVAYAYLFYPRDRALSELAMKRLQVISDFTELGSGFKIAMKDMEIRGAG
NLLGREQSGDIYSVGFDLYLRLLDDAVRRLENSQYEAETETLLELEYTGFIPDFYIDGAQ
EKMEVYKKIAAVKTRDELESLHGELMDRFGPPPDEAASLLALAEIRIICRDISVFSLRER
GGSVKVEFGKVSRVKIDRLLRLMKESSGRVKLDPKAPNVLILQTGSIGLKEKSEFIREKL
AALAG
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccttatcctttccttcgttcttaaaaaaaatagtcgcttccgacgcagtttcc
agggttctggacgaattcaaggggggcaaattccccctggagatagagggcgccgagggc
tcctttggggcaatactcctgtccgccctgttccagaccaatcacgataatctgttggcg
gtgaccccctcggagcgggaggcggcggagctggccacggacctggaaaccctgggtgtc
ccggtggccttgtttccctggtggggaaccgtttcctaccgggaaatggcccccctttcc
acggtattcggggagcgcacccgggttttgggctccctggccaggtctatagaagcgggt
ccggggaaccggggcattgtggtggtcccggaacgggccttcctcacccccttgccgccc
ccggagtatatccgcagcctactcattactcttaaaccgggtggtaaaatcgatactatc
gccctggctgagaccctgtcgggttacgggtatatccgggttccacgagtccaggtccac
ggggaattcgccctgcgcggggaggtgctggacatactcatgggcggggatgattcggct
taccgggtcctctttgactttgaccaggtggagtccatcaagcgttttgacccggtggac
cagagcagcttggggccgggggaccgggaaaaggtcggcgagttggtgatccggcccctg
aaggaagtggtctggtccgatgagcgtatagagaccctgagccggaacctggcatccttt
ccggaatttgccaatcagggccgggccatgcttgaagagctgatgacccggcggggcgcc
ggcggagaggaactgtttttccccctggcctttgaagggggggcagcggcgctgacggac
tactttgcgcctggtgccggggtttgctatctggaacgggaacggctggagaacgcccag
gaatccctggaacgggaataccacagtttttataccaaagctttgcgggagcgggaagtc
ccggcgccggaacggatactgctgaaatttgcggacctggcgggacgtttgccccggcag
gtgtcgttcatgactattaaggggaatgccgaaactgaggccaagcggatcatggtatcc
tgcgatcccccgcgtagtttttttggcaacatcaattatctcaaggaagagttttcggtt
ttggctgcccagggctgggaactggtggtggccgcagaatcggaaacccaggcggggcgg
ctgaccgagcttttcaaggacgagaaggttactgtcgccgcggcgcccctttccatgggc
tttgccctgccggacagtaaatttatgctggtccaggaaaacgagattttcggccggcgg
aaacggcctccccggtctctcaagcaggtgcgcagcgttgctattgacacttttgttgag
cttaaccctggggactttgtggtgcacataaactacggcatcgggctttttaaggggatt
gagcggataaaggccctggggcacgagcgggactatatcaagctggaatacctgggcgaa
gaaatcgtctttgtccccattgagcaggtcaacctggttcagcgctatatcggcaacgaa
ggcagcccgccacggatggacaagctgggttccaaaagctgggaaaaccgcaaggggcgg
gtcaagaaatccgttgaggatatcgcagaaaaactaatcgagctttactccaagcgcaag
gcttcccggggttttgcctttccccaggacagcgaatggcagaccatgtttgaggcggcc
tttccctttgacgaaaccgaggatcagctccgctgtgtggaggagattaaggacgacatg
gaaagcacccaccccatggaccggctgatctgcggggacgtggggtacggcaaaacagaa
gtggcggtgcgggcctgcttcaaggctgtcatggggggcaagcaggtagcgtttctggcc
cccacaacgatactggcggaacagcactttgaaaatttccaggaacggttctcccagttt
cccatacgcctgggtatgctctcccgcttcgttgaccgggccgcagcacggaagaccctg
gaagcggtacagaagggcgaaatagatatactggtggggacccatcggatcatccagaag
gatgtgagtttccgggacctggggctcattgttattgacgaagaacagcgtttcggggtg
aaggacaaggagcgtctcaaggaactcaagcacaatgttgactgcctgaccctttccgcc
acccccataccccggaccctccacatgagccttctcaagatccgggacatgagcctcctg
gcaacccctcccaataaccgccaccccattgaaacggtaatcggcgaatacaacgaggac
cggcttgcggcggccatacgggcggaggtcgagcggggcgggcaggtattctttctgcac
aatagggtggaaagcctcaatgaaacccggatacggatagaacatctggcgccggagatg
ctggtggaaaccgcccacgggcaaatggacgcccaggacctggaagacgtgatgcaccgg
tttattcacgggggcttccatgtcctggtgtccaccaccattattgagaacggcatcgat
attcccaatgtgaacaccattattatcgaccgggcggacatgtacggggtgtcccagctg
taccaacttcgggggcgggtagggcggtccgaccgggtggcctacgcgtaccttttctac
ccccgggaccgggccctgtcggagctggccatgaagcggctccaggttatttcggacttt
accgagctgggttcggggttcaagatcgccatgaaggacatggagatccggggcgccgga
aacctcctgggccgggaacagtccggggatatttattctgtgggctttgacctctacctc
cgtctcctggacgatgcggtacggcggctggaaaattcccagtacgaggcggaaacagaa
accctgctggagctggaatacacggggttcattccggatttttacatagacggggctcag
gaaaagatggaagtctacaagaagatcgccgcagtaaaaacccgggatgaactggaaagc
ctccacggggaacttatggaccgcttcggcccccccccggacgaggccgcatccctgttg
gccctggctgaaatacgcatcatctgccgggacatctcggtgttctccctcagggagcgg
ggcggttcggtgaaggttgaatttggcaaggtttccagggtaaaaatagaccggctcctg
cggctcatgaaggaatcttcaggccgggttaagcttgatcctaaggcccccaatgtgctg
atattacagaccgggagcataggcttaaaagaaaagagcgaattcatccgtgaaaagctg
gcggctttagcgggctga
DBGET
integrated database retrieval system
