Treponema primitia: TREPR_2580
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Entry
TREPR_2580 CDS
T01507
Name
(GenBank) transcription termination factor rho (ATP-dependenthelicase rho)
KO
K03628
transcription termination factor Rho
Organism
tpi
Treponema primitia
Pathway
tpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TREPR_2580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpi03021
]
TREPR_2580
03019 Messenger RNA biogenesis [BR:
tpi03019
]
TREPR_2580
Transcription machinery [BR:
tpi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TREPR_2580
Messenger RNA biogenesis [BR:
tpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TREPR_2580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
OB_RNB
ATPase_2
AAA_22
Fungal_virus_P2_C
ResIII
AAA_25
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AEF85975
UniProt:
F5YGJ9
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All DBs
Position
1605225..1607132
Genome browser
AA seq
635 aa
AA seq
DB search
MAIIRKSRNSKTANHDELPGFDKDESAQGDFSADQSYDSQGDLHSFEGSEPDRVLQNPGE
GDTESGYAQSTQLGQDDYGSERGNGKTIVVRTKPRRTPSSRENPGRFSENGNAWNESAYA
SPGQGRPRGRRPYGGANQGNFNSSGAQPMQSMGSRENGTEDQVSASQDASPQGAPQGTAP
GLPLPAIPKLPSMPDIYGKPEPRLDQDNGKPRLSINELIRLNMIDLRELAACYNISHEDM
VALKKQEVIFIILKAHTERGGIIYAYGSLEILPDGYGFLRSPQNSYLPGPDDIYISPSQI
RLFALKTGDTVYGQIRSPKESERFFAMLRVETVNYDDPTVAQNRIPFDNLTPLYPNKILD
LETTTEGISERVINLFCPIGKGQRALIVAPPRTGKTIMMQKIANAITKNHPEVYLIVLLI
DERPEEVTDMERTVRAEVISSTFDEQASRHVQVTEMVLEKAKRLVEHKKDVVILLDSITR
LARAYNQTVPMSGKILSGGVDSNALHKPKRFFGAARNIEEGGSLTIISTALIETGSRMDE
VIFEEFKGTGNLEINLDRRISDRRLFPAINIKKSGTRKEELLLAEEQLQKIWILRKVINP
MDDIEIMELLVDRMKKSKNNEAFLRSMNTGSAGMD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcaattatacgaaagagtcgaaattccaaaacagcgaatcacgatgaactaccgggt
tttgataaggacgaatcagcccagggggatttttccgccgatcagtcctatgactcccaa
ggtgatcttcattcctttgaaggttcagagccggatagggtgctgcaaaatcccggtgag
ggggatacagagtccggatatgcccagtcaacccaattaggccaggatgattatggatct
gaacggggaaatggcaagaccattgtggtccgtaccaagccccgtcggaccccctcttcc
cgggaaaacccgggaaggttttctgaaaatggcaatgcctggaatgagagcgcctatgcc
tcaccgggccagggcagaccccggggacggcggccctatgggggggctaatcaggggaat
tttaactcctccggggcccaacccatgcagagcatggggtcccgggagaacggtactgaa
gaccaggtttctgcgtcccaggatgcttcgccccagggcgcccctcaaggtacggcgcct
gggcttcccctgccggccatacccaagctgccctccatgccggatatctacggcaaaccg
gaaccccggctggatcaggataacggcaagccccggctttccatcaacgagcttatccgg
ctcaacatgatagacctgcgggagctggcagcctgctacaatatctcccacgaggacatg
gtggccctgaaaaagcaggaagtcatctttatcattctcaaggcccacaccgagcggggg
ggcatcatctacgcctacggctccctggaaatactccccgacggttacggcttcctccgc
agcccccagaactcttaccttcccgggccggacgacatctacatcagccccagtcagata
cggctctttgccctgaaaaccggggacacggtctacggtcagatccgcagccccaaggaa
agcgaacgcttctttgccatgctcagggtggagaccgtgaactacgacgaccccacggtg
gcccagaaccgcatcccctttgacaacctgacccccctgtaccccaataagatactggac
ctggagaccaccaccgaaggcatcagcgagcgggtgatcaacctcttctgccccattggg
aaaggccagcgggccctgatcgtggcccctccccggaccgggaagaccatcatgatgcag
aagatcgccaatgccatcactaaaaaccaccccgaggtctacctcatcgtgctcctcatt
gacgagcgtcccgaggaagtgaccgacatggaacgtacggtccgggctgaggttatctcc
tccacctttgacgaacaggccagccgccatgtccaggtaaccgaaatggtcctggaaaag
gccaagcgcctggtggagcataaaaaggacgtggtcatacttctggactcaattacccgg
ctggcacgggcctataaccagaccgtgcccatgtcgggaaagatactctcagggggcgtg
gactccaacgccctccacaagcccaagcgctttttcggggccgcccggaacattgaggaa
gggggcagtctgaccatcatctccaccgccctgatagagaccggcagccgcatggacgaa
gttatctttgaagaattcaagggcaccggcaatctggaaatcaacctggaccggcgcatt
tccgaccgtaggctcttcccggcgatcaatatcaagaaatccggcacccggaaggaggaa
ctgctcctggcagaggaacagctccagaaaatatggatactcaggaaggttattaacccc
atggacgatatcgagatcatggaactcctggttgacagaatgaagaaaagcaagaataat
gaagcattccttaggtcaatgaacaccggctcagccggcatggattaa
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