Treponema primitia: TREPR_3821
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Entry
TREPR_3821 CDS
T01507
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpi
Treponema primitia
Pathway
tpi03030
DNA replication
tpi03430
Mismatch repair
tpi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREPR_3821
03430 Mismatch repair
TREPR_3821
03440 Homologous recombination
TREPR_3821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpi03032
]
TREPR_3821
03400 DNA repair and recombination proteins [BR:
tpi03400
]
TREPR_3821
Enzymes [BR:
tpi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TREPR_3821
DNA replication proteins [BR:
tpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TREPR_3821
DNA repair and recombination proteins [BR:
tpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TREPR_3821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
BOF
Peptidase_Mx
DUF2117
Motif
Other DBs
NCBI-ProteinID:
AEF84747
UniProt:
F5YPM1
LinkDB
All DBs
Position
346906..350898
Genome browser
AA seq
1330 aa
AA seq
DB search
MVEFVHLHVHSDFSLLDGAASVEALAAKAASLGMKHLAITDHGNMFGALKFRNACLGDKD
HPLKDRAPVHPIIGSEFYMAPGSRTDRKGGENGNKYYHLILLATNEEGYRNLMKLSSYSY
TEGFYYKPRIDRELLEKYHAGLICLSACLAGEIPSLILRGQIQEAEKTALWFNSLFGQDN
FYLEVQDHRIPEQRQVNPIIVEIAGRTGIPLVATNDIHYIEKEDSIAQDLLLCIGTQAKR
GDEKRMRFDTDEFYFKTGDEMAALFPEAQYPGAIANTVRIAERCKTEIPSPGPLLPDFAI
PEGYANADEYLRRQTMEGMEKRYPAMDAEVVQRAEYELGVIISMGFTGYFLIVADFINWA
KEHDIPVGPGRGSGAGSIVAYALRITNNDPIKYKLLFERFLNPERISMPDFDVDFANEGR
QDVIDYVTEKYGKEKVGQIITFGTMKAKAAVKDVARALDISIDESNMLTKLIPEDPKMTL
KKAFEQEPRLRELEQEPKYQELFAMARKLEGKNRNSSIHASGIVIGKTDLTDYVPLYQDK
SGAVASQYTMDLIEPQGLVKMDFLGLKTLDLIDHSVKLIRRRGGEYAAFDIETISETGTA
ESDAVFKMLGEGKSYGVFQFESEGMQKVLKDAQPTSIEDLIALNALYRPGPMDNIPQFIA
SKHGRQAIVYPDPSLEGILKETYGVIVYQEQVMQVAQIIAGYSLGQADILRRAMGKKKRE
ILDKEKVPFIAGALKRGFKEADADRIFEILAPFAGYGFNKSHAAAYAVLAYQTAYLKANF
PVEFMAANMSNEISSVDKLPLYIDEARRMGISIDPPDINRSDRLFTVVDGRIVYGFVGIK
GLGDGSAEEIINCRKDGPYKSFMDYLDRVNIKTVGKKVTEILARTGAFDSFGQTRQTLIQ
NLETAVDHAQNKKADKELGQASLFDDTDEQAFPDYKFTIHPEMDREEKLNIEKELIGFYF
SGHPLDDYKEEWEKFVKLDLSDPDNAPERDYTLIGILKTLKPYTNKSGRAMAFASLSDYR
GEIDIVFFEKPWESCRDKIAEGDKIVLKGRLDKSRGKASLRVESILSPERLKIKEDLLEY
CSSGHPLDDFAEAWEQFVKLDLSKTESAPEEEYTLIGMLTSLRPITTKAGKDMAFGSLAD
YRGEIDLVFFTRAWTNSKEKLIENQCVALKGKLDKSREKPSFQVSSVLETDKLRKKAAKN
AAPTEHPGEEAGPDTETLAAQAAGNPGQGGGSPDVVRAPVWRELHIRLKTAVCEREENLY
PLRDYLYDNSGPCSVFIHVPEAAETATVDSGGKVAAETVIRAAAGIGVSADAPCIEALSL
YAAVAEVWGA
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
ttggttgaatttgttcacctccatgtccattcggatttttccttactagacggcgccgcc
tcggtggaagccctggcagccaaggcagcgtccctggggatgaaacatttggctatcacg
gaccacggcaacatgttcggggccctgaagtttcgtaacgcctgtttaggcgataaagac
cacccccttaaggaccgcgctccggtgcatcccattatcggcagcgaattttacatggct
ccggggtcccgaaccgatcggaagggcggcgagaacgggaacaagtactaccatctgatc
ctcctggctaccaacgaagaaggataccggaacctcatgaagctttcatcctattcttat
accgaagggttctattataaaccccgaatcgaccgggaattgctggaaaaataccatgcc
gggcttatttgcctttccgcctgcctggcgggggaaattcccagtctgatcctccggggg
cagatccaggaggcggaaaaaaccgccctgtggttcaacagcctctttgggcaggacaat
ttttacctggaagttcaggatcaccgcattccggagcagcggcaggtaaaccccataatc
gtcgaaattgcgggtcgtaccggcatccccctggtggctaccaacgacatccactatata
gaaaaggaagattccattgcccaggatctgctcctctgcataggcacccaggcgaagcgg
ggggatgaaaagcggatgcgctttgacaccgacgagttttacttcaaaaccggggatgaa
atggcggccctgttcccggaagcccaataccccggggccatcgccaatacggtgcggatt
gccgaacgctgcaaaaccgagattcccagccccgggccgctgttgccggactttgcaatt
cctgagggctacgccaatgcagatgaatatctgcggcggcagaccatggaggggatggaa
aagcgataccccgccatggacgctgaggttgtccaacgggcggaatatgagcttggggtg
atcatctccatgggctttacaggctacttcctcatcgtggcggattttatcaactgggcc
aaagagcatgacatccccgtgggccccgggcgcggttccggggcgggctccattgttgca
tacgccctgcggattaccaacaacgaccctattaagtacaagctgctcttcgagcgtttc
ctcaaccctgaacggatatccatgcccgactttgacgtggactttgcaaacgagggccgt
caggacgtgattgactatgtgactgaaaaatacggcaaggaaaaggtggggcagattatc
acctttggcaccatgaaggccaaggctgcggttaaagatgtggcccgggcgctggacata
agcattgacgagtccaatatgctgaccaagcttatcccggaagaccccaagatgaccctg
aaaaaagcctttgagcaggagccccggctgcgggaactggaacaggagcctaagtatcag
gaactttttgccatggcccgcaaactggaggggaaaaaccgcaattccagcatccatgcc
tcggggatcgtgatcggcaaaacggatttgaccgactatgtgcccctttaccaggataag
agcggcgccgtggcgagccagtacaccatggacctgatcgaaccccagggtctggtaaag
atggattttctggggcttaaaaccctggaccttattgaccattcggtaaaacttatccgc
cgccggggtggggaatatgcggcttttgacatcgaaaccataagcgagaccggaacggcg
gaatccgatgcggtctttaaaatgttgggagaggggaagagctacggggtgttccagttt
gaatccgaggggatgcagaaggtcctgaaagatgcccagcccaccagtatcgaagacctt
atcgccttaaacgccttatacaggccggggcctatggataatatcccccagtttatcgct
tccaaacacggccgccaggccattgtctatcccgatcccagcctggaaggtattttgaaa
gagacctatggggttatcgtctaccaggaacaggtcatgcaggtggcgcagatcattgca
gggtacagcctggggcaagcagatatactgcgcagggccatgggaaagaagaaacgggaa
atactggacaaggaaaaggtgccctttattgccggggcgctgaagcggggctttaaagaa
gcggacgcagaccggatctttgaaatcctggcgccctttgccggctacggctttaacaag
agccacgctgcggcctatgcggtgctggcctaccaaactgcgtacctcaaggcgaatttc
ccggtggaatttatggctgcaaatatgtccaacgaaatttctagcgtggacaagctcccc
ctctatatcgacgaggcccggcgcatgggtatttccatcgatcccccggatatcaaccgc
tcggaccggctttttactgtagtggacggccgcattgtctacggctttgtgggcattaag
ggcctgggggatggttccgcagaggagatcatcaactgccgcaaggatggcccctacaag
agctttatggattacctcgatcgggtgaacattaaaactgtgggcaagaaggtgacggag
atcctggccagaaccggggccttcgacagtttcggacagacccggcagaccctgatacag
aacctggaaactgcggtggatcacgcccagaacaaaaaagcggacaaggaactggggcag
gccagcctctttgatgacaccgacgaacaggcatttccggattacaaatttacgatccat
cccgaaatggaccgggaggaaaagctcaacatcgaaaaggaacttatcggcttttatttt
tccggccaccccctggacgattataaagaagaatgggaaaaatttgtaaaactggatctt
tcggatcccgataacgccccggagcgggattatacccttatagggattctgaaaaccctg
aagccctacactaataagagcggcagggccatggccttcgcttctttgtcggattatcgg
ggtgaaatagacatagtgttttttgaaaagccctgggaaagctgtcgggataaaattgcc
gagggtgacaagatcgttctcaagggcaggctggacaaatcccggggtaaggcaagtctg
cgggtagaatcgatactctccccggaacggcttaaaataaaagaagatctgctggagtat
tgttcatccggccatcccctggatgattttgcggaagcctgggaacagtttgtaaagctg
gacctttcaaagaccgaaagcgcccctgaggaggagtataccctgataggaatgctcacc
agcctcaggcccatcaccaccaaggctggcaaggatatggcctttggttccctggcggat
taccggggtgaaatagatttagtgttttttacccgggcatggacaaacagcaaagaaaag
ctgatagaaaaccagtgtgttgcccttaaggggaaactggataaaagtcgtgagaagccc
agctttcaggtaagttcggtcctggaaacggacaagctcaggaaaaaggcggcaaaaaat
gcggcgcctacggagcatcccggggaggaagcagggccggatacagagaccctggcggcc
caggctgccggaaacccggggcagggcggcgggagtcccgatgttgtgcgggctccggtt
tggcgggaactgcacatacggctaaaaactgcggtctgtgaacgggaagagaatctctac
cccctgcgggattatctgtatgacaattccggcccctgctcggtgttcatccatgttcct
gaagcggcggagactgccacggtcgattcagggggtaaagtagccgcggagacggtgata
cgagccgctgccgggataggcgtatctgcggatgctccctgcattgaggccctgagcctc
tatgctgcggttgccgaagtgtggggagcatga
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