Candidatus Tremblaya phenacola: TPPAVE_058
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Entry
TPPAVE_058 CDS
T02908
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpj
Candidatus Tremblaya phenacola
Pathway
tpj03030
DNA replication
tpj03430
Mismatch repair
tpj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TPPAVE_058 (dnaE)
03430 Mismatch repair
TPPAVE_058 (dnaE)
03440 Homologous recombination
TPPAVE_058 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpj03032
]
TPPAVE_058 (dnaE)
03400 DNA repair and recombination proteins [BR:
tpj03400
]
TPPAVE_058 (dnaE)
Enzymes [BR:
tpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TPPAVE_058 (dnaE)
DNA replication proteins [BR:
tpj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TPPAVE_058 (dnaE)
DNA repair and recombination proteins [BR:
tpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TPPAVE_058 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Ham1p_like
Motif
Other DBs
NCBI-GeneID:
17622853
NCBI-ProteinID:
AGO28252
LinkDB
All DBs
Position
45403..48876
Genome browser
AA seq
1157 aa
AA seq
DB search
MIDCSPSFVHLRLKSEFSVSNSTIRLKEALGFAKRDCQVALALTDSDNLFGAVSFYDEAR
RVGIKPIIGCDVNLESERDGNSNALILVRNWEGYKSLCRLLTLSWLKNRANDMAAVKKEW
LVGPDTHNFILLSGGANGDIGKAILDGEFSEAVRLTSSWVKMFPGRFFLELQRHSTTPEQ
VNESLINLSKMLGVPVVATHPIQFLGETDFFLHEVKSCIFDGSIVSDRKRQRKFGWDQYF
KSQAEMGELFSDIPIALSNTIRIAQKCNLELSFGKGRTPPFPLTPGCTLKEHFLKALIGK
LGDRIRRGGLVVEKHGCYTKYKIRLLSEYRVVSNMSFLEYFLVVSDFVRWSKRKDIAVGP
GRGSGAGSLIVFVLGITDIEPLQYGLLFERFLNPNRVSMPDLDIDFCQERRDQVIYYVRE
KYGAAFVSQITTFGTLTTKAAIRNIGRALNLNYSLVDSVAKLIPERPNHPITITEALKKE
PLLLQKCEEDCGVRQLINYATKMEGLTRNVAVHAGGVLITPLAITNFCPLYSQSDAFSMM
VSQLDKDGIERIGLTKFDFLGLTALTVVSVTIEHIKRLNCLDGLVLKNISSKDPRTFKLL
QQANTIAVFQLEGLGMRGMLRIARPDNIGEVIALIALYRPGPIKLIHSFFKRKYGLEEVT
YPSILLQPILEETFGVMVYQEQVMQIAQTIGGYTLTEADLLRRAISKKQTTEMHKHRALF
NSRTKLLGIDHLQSDAIFQLMEKFACYGFNKSHAAAYASLSYQTAWLKAHFPVSFIAANF
SYSMSDFDRIKALYQDCRKGGVCLLQPDINTSLFQFEPLEEQQKADQIGIISYGLGAIRG
CSKNAVKEIIRVREDRPFNGILDFCFRANRRVVSRRLIESLIKAGAFDNLHGFKYRSSLL
GLIPSIIRYSFNLKVSKSRDILPFVRIGPAKMIELIAKATPILTKRKILKEEKRALGFYL
TEHPFKYFRRELFQVFKTDINTIKSDAQHKSTGTICGIVTTIVPQSFRGKPAVRIVIEDG
RDQCQALIRNDLLDWKLSKDQLVVITGEVRVTLNREASNLTATSIMSLGQVRDQFCHSIL
VWVGGSKDITKARALLQSQINLGGRPLVVKIGIRGVQIVSCLYYFNCSLAKIVLGLKRRV
NVLRVLYSYPDSLELGN
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgattgattgttctccaagctttgtgcacttgcgtcttaaatcagaattctcagtttct
aacagcacaatcagattgaaagaagcattgggttttgctaagagagattgtcaggtcgcc
ctcgctctaacagactcggacaacctttttggagcagtgagcttttatgatgaggctagg
agggttggaattaaacctattattggttgtgatgttaatttggaatctgaaagggatggt
aacagtaacgccctcatccttgttagaaattgggaggggtataagagcctctgccgcctt
ctaactctgtcttggcttaagaatagggctaatgatatggcggcagttaaaaaggagtgg
ttggttgggcctgacacccataatttcatcttgttatcaggaggggctaatggtgatatt
ggaaaggcaatattggatggtgaattttctgaagctgtgagattaactagcagttgggtt
aaaatgttcccaggccgtttctttttggaattacaaaggcacagcacaacaccggaacag
gttaatgagagccttatcaatctttcaaagatgctaggtgtgccagttgttgccacccat
ccaatccaattcttgggagaaactgatttctttcttcatgaggtaaagtcttgtattttt
gatggttcaattgtttctgacaggaaaaggcaaaggaaatttggttgggatcagtatttt
aaatctcaagctgaaatgggtgagttgttcagtgacattcctattgctcttagtaacacc
atcagaatcgcacaaaaatgcaatttggaactgtcttttgggaagggcaggacaccgccc
tttcccctaacaccaggatgtacgctaaaagaacattttcttaaagccctaattgggaag
ctaggagatcgcattaggaggggcggtcttgtagtcgaaaagcacggctgttacaccaaa
tacaaaattaggttgctctcagagtacagagtagtttccaatatgtcctttttagaatac
tttttagttgtctcagattttgttaggtggtcaaaaagaaaggacatagcagttgggcct
ggaagaggatcaggtgctgggtcattaatagtttttgttttgggaataacggacattgag
cccctccaatacggccttctttttgaaaggtttttgaatccaaatcgtgtctcaatgccc
gatcttgatattgatttttgtcaggaaagaagggaccaagtgatttattatgtgagagaa
aaatatggtgccgcttttgtttctcagatcacaacatttggcaccctaacaacaaaggca
gccatcagaaacattgggagagctttgaatcttaattactctttagtagacagcgtagcc
aagctaatacccgaaaggcccaatcatccaatcacaataacagaggctcttaagaaggag
ccccttctccttcagaagtgcgaagaggattgtggtgtaaggcaactgatcaattacgca
accaaaatggaagggctcactcgtaatgttgctgttcatgctggtggtgttttgattacc
cctcttgccatcacaaacttctgtcctctttattctcaatctgatgcttttagtatgatg
gttagccagcttgataaagatgggattgaacggatcggcctaactaagtttgattttctt
ggtcttacggccctaacagttgtcagtgtaacaatcgagcatatcaaaaggctaaactgt
ttggatgggttggtgcttaagaacatctcttccaaagatccccggacctttaagctttta
caacaggccaatacaatagcggtctttcaattggaggggttaggaatgcgagggatgtta
cgaattgctagaccagataatattggagaggtgattgctcttattgctctctatcgacca
ggcccaatcaaactcatacacagtttttttaagcgtaaatatggtttggaggaagttact
taccccagcattttattacaaccaatattagaagagacttttggtgttatggtttaccaa
gagcaggtgatgcagattgcccaaacaattggaggctacaccctaactgaagcagatctt
ttacgaagagcgataagtaagaagcagacaactgaaatgcacaaacacagggccctcttt
aatagcagaacaaagttgttgggcatagatcacctgcaatcagatgctatctttcagctt
atggagaagtttgcttgttatggtttcaataagtctcatgctgctgcatatgcttcacta
tcttaccaaacggcttggttaaaagcacacttccctgtttcttttattgctgctaatttc
agttattcgatgtcagactttgatagaataaaggccctgtatcaagactgtaggaaggga
ggggtgtgccttcttcaaccagacataaacacctctctttttcagtttgagcctttagaa
gaacagcaaaaagcagatcagattggtatcatatcttatgggttgggtgctattagaggt
tgcagtaaaaatgcagtaaaagaaatcattagggtcagagaagacaggccattcaacggc
atactagatttctgtttcagagcaaacaggagagtagttagtaggagactaattgagtct
ctaataaaagcaggggcctttgataatcttcacggctttaaatacagaagctcgcttttg
ggtcttattccctcaatcatcagatactctttcaatcttaaagtatcaaagagccgtgac
attcttccttttgttaggattgggcctgctaaaatgattgagttgattgccaaagccaca
ccaattctaaccaagaggaagattcttaaagaggagaagagggcacttgggttctattta
actgagcaccctttcaaatattttagaagggaactgtttcaggtttttaagacggacatc
aatactattaaatcagatgcccagcataaaagtacgggtacaatctgtggtatcgttacc
accatagtaccgcagagttttagaggcaaaccagctgttagaattgttattgaggacggc
agagaccaatgccaagctctcattagaaacgatctactagattggaagctttccaaagac
caattggttgtgataacaggagaagtgcgggtcactttgaacagggaagcttccaatctc
acagcaaccagcattatgagtttggggcaggttagagatcagttttgccattccatttta
gtttgggttggaggcagtaaggacatcacaaaagccagagcattactacaatcccaaata
aatttagggggaaggcctttagttgttaagattggaattaggggcgtccagattgttagc
tgtctctactattttaattgttctcttgctaagatagttttgggattgaaacggagggtt
aatgttctgagggttttgtattcgtacccagactctttggaattaggtaattaa
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