Candidatus Tremblaya phenacola: TPPAVE_149
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Entry
TPPAVE_149 CDS
T02908
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tpj
Candidatus Tremblaya phenacola
Pathway
tpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPPAVE_149 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpj03021
]
TPPAVE_149 (rpoA)
03400 DNA repair and recombination proteins [BR:
tpj03400
]
TPPAVE_149 (rpoA)
Enzymes [BR:
tpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPPAVE_149 (rpoA)
Transcription machinery [BR:
tpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPPAVE_149 (rpoA)
DNA repair and recombination proteins [BR:
tpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPPAVE_149 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
17622946
NCBI-ProteinID:
AGO28328
LinkDB
All DBs
Position
complement(121747..122418)
Genome browser
AA seq
223 aa
AA seq
DB search
MLRPQIKTITGNLNCNVQITIEPFRRGLGRTVGWALRRTLLSSIVGVAVTQVMIEEMSHQ
FQPVYGVTEDISQIISNIRKIIFWTSESVTTAVLIKNTPGPFQAKDIVVSKRCKIINPDQ
IIGHLEDGRISMRFKIERGWGFIPKNKTAPSNSNTIILDASFTPVKRVSYTTREIRTETN
LDAEKLILEIETNGATSPLEVLRQSVKIMRTQLSFEGSENYEA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgctaagaccccaaatcaaaacaattactggcaacctcaactgcaatgtccaaatcaca
atagaaccttttagaaggggcttaggcagaactgttgggtgggctctcagacgaaccctc
ctctcttctattgttggggtggcagtgacccaagtaatgattgaagagatgtcccaccaa
ttccaaccagtttacggtgttactgaggacatctcccagattatttcaaatatcagaaag
ataatcttctggacgtcagaaagtgtcactactgctgttctgattaaaaacacaccaggg
cccttccaagcaaaagacattgttgtttcaaaacgatgcaagataattaatcctgaccaa
atcataggccatttagaagatggcagaattagcatgcgctttaaaattgaaagaggttgg
ggcttcattcctaaaaacaaaactgcaccctccaattccaacacaattatcttagacgcc
tcttttaccccagtgaagagagtcagttacacaaccagagaaatcagaactgaaactaat
ttggatgctgaaaaactaatcttagagatcgaaacaaacggcgcaacttccccgcttgaa
gtgctgagacaatcagttaaaattatgagaacccaattatcttttgaaggttctgagaat
tatgaggcataa
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