Candidatus Tremblaya phenacola: TPPAVE_180
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Entry
TPPAVE_180 CDS
T02908
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpj
Candidatus Tremblaya phenacola
Pathway
tpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPPAVE_180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpj03021
]
TPPAVE_180 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpj03400
]
TPPAVE_180 (rpoB)
Enzymes [BR:
tpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPPAVE_180 (rpoB)
Transcription machinery [BR:
tpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPPAVE_180 (rpoB)
DNA repair and recombination proteins [BR:
tpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPPAVE_180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
17622977
NCBI-ProteinID:
AGO28359
LinkDB
All DBs
Position
complement(141862..145737)
Genome browser
AA seq
1291 aa
AA seq
DB search
MKEFPIPNLQYSQDKSFGRFLQQDRTEGRGYFGLQSNLLQTLSLKTADNRIRVGFLKYTC
LQPKISEGEARKYGLTYTISLYLHFKIIIKEGPIILSEEEECIFLGDLPALTKIGSFILN
GTDKAPISQLERKPGLYIEKEDGSSASTIFLRIVPPMGLWIEFKVEKDGTICCYHGKKRK
PLIGSVLEESSQNITAFWDNMNPGETVFITRTRCFLNLDPWELENNKAPTNIKDLEDPNT
IIFPKGIKMIQNNVLNLLQSNIFVSQILPDEIFELAPQVLPNVIKLCSEQKLNRIKIKRQ
QLNLYQRFLTETMNLRKTITNLNSGINEASDQERERTPFPNAFGSPMHNLSENCRQSINS
KTYQITKSKSVEKADVYLLVKLLIKTAINKPVLDDVDNLKNKRLSQTGDLISKLLNTIIF
RLKYKILEDIKTLTNSKKLKPTINGLNDNENNITKIFSAEQTFQLLEHTNPLSRLTHIRR
LSFGLSSASNKKRVGLDIRDVHYSYYSKICPVETPEGQSIGLVNSLTSHVRINSDGTLMA
SYLKPKRSDAINSLIDYEVENDNIIFLSACEEEQYILSGILSQTSELKRRVLSRKGSETI
LSDQNDVQLIDASPSQTVSAAASLIPFLEHNDVNRALMGSNMQRQVVPLFLTEKPIIQTG
TENAIARDTGSCTIAIENGKVVFSGHNRIVTKSRKFGNFYQHFHNYNLEYFVDPLHSITT
HLSALIEVNSQAHQDGIIADGPATKSGVLSLGQNILVAFMPWKGLNFEDSVIVSKELIIN
KKYVSVHLEEIVVAVQDSEFGVEITTKDIRNSKHANLDCNGIILVGSDVRPGDLIIGKQF
TKKKRFINQPEKDILQAIFNYESTNITDTSVFAPQDFVGTVIDVKIQTKIFSQDEKLCFS
ISNQDLLFKLAQQELEVFSIIKIHLIKLGLDFVQLKKMDPYKWVILCGRSPTFKSYANAL
TSLLSFQQKIRAEMRAKKKNKMAVEKLPTSISKLIKIILASERQLQTGDKMAGRYGNKGV
VSKIVAAENMPHLITGQSIEIVLNPLGVPSRMNVGQIFETHISFLIKINEMRIVRKKMDW
VGRCAINWYREASCQLKQNNLWDLRNLISSPSFATLEIPAIKIFNQNENEKLLFNLRQSI
SFKVEKRLGCSHLKDQVFLIDGTSGEECYLPTTIGYLYYFKLHHLAEDKMHVRSTGPYSK
MTQQPLAGKSHAGGQRLGEMEVWALEAYGAAYNLHEMLTIKSDDVWGRSKMQKGGVISNQ
PLLTGMPESFNVLIKEAKALNIDLTPNPKEG
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatttccaatccctaacttacagtattcacaagacaaatcttttggtagattt
ttacagcaagatagaactgagggaaggggctattttggattgcaatcaaatctattacaa
actctctcattaaaaacagcagacaatagaattagggtgggctttcttaagtacacatgc
ttacaacccaaaatatcagaaggggaagctagaaaatatggtctaacatatactatttca
ttgtatttgcatttcaaaataatcataaaagaaggtcccattattctttcagaagaagaa
gagtgcatttttttgggggaccttcctgccttaacaaagattggttcttttattttaaac
ggcactgataaagctccaatatctcagcttgaaagaaaacctggcctttatattgagaaa
gaggatggcagcagcgcatccaccatctttctgagaattgtgcctcctatgggcttgtgg
attgaatttaaagtcgaaaaagatggaaccatttgttgttatcatggtaaaaaaagaaaa
ccactgattggatctgttttagaagaaagcagccaaaacatcactgccttttgggacaac
atgaatccgggtgaaactgtttttatcacaagaacaagatgctttcttaatttagaccct
tgggaattagaaaataataaagccccaactaatattaaagatttagaggatcctaatact
attatttttcctaagggaattaaaatgatccaaaataatgtcctcaatcttttacaatct
aatatttttgtatcccaaatcttaccagatgaaatatttgaacttgctccccaagttctt
ccaaatgttattaaactttgtagtgaacagaaactaaatagaataaaaattaagagacaa
cagcttaatctgtatcaaagatttttaactgagactatgaatcttagaaaaactattact
aatttgaattcaggcattaatgaagcgagtgatcaagagagggagcgcacaccttttcca
aatgcttttgggtcaccgatgcacaatctatcagaaaattgtaggcaatcaattaatagc
aaaacatatcaaatcactaaatctaaatcagtagaaaaagcggacgtttatttattagta
aaacttttaattaaaactgcaattaataagcctgttcttgatgacgtagacaatctaaaa
aataagaggttgagtcagacgggcgatcttatcagtaagcttcttaacacaatcattttc
cgattaaaatataaaatattagaagacattaaaactttaactaacagcaaaaaactgaaa
cctacaattaatggattaaatgataacgagaataacatcactaaaatcttttcagctgaa
caaacctttcagctgttagagcatactaatccactttctagattaacccatatcagacga
ttaagttttggcctgtcttctgcctctaataaaaaaagggtgggattagatattagagat
gttcactattcttattacagtaagatctgtccagttgagacaccagaaggccaaagtatt
gggttagtaaattctctgacctctcatgtaagaattaattctgatgggactttgatggca
tcttatcttaagcccaaaagaagtgatgctattaactctttgattgattatgaagttgag
aacgataacatcatctttctttctgcttgtgaagaggaacaatatattttgtctggcatc
ttatctcaaacctctgaattaaaaaggagagttttaagtagaaaaggatctgagacaatt
ttaagtgaccaaaatgacgtacaactgatagatgcttcaccctcccaaacagtttcagct
gctgcttctctgattccctttttagaacataatgatgttaacagagctttaatgggatct
aatatgcaaagacaggtggtgcctttatttttaaccgaaaagccaataatccaaactgga
acagaaaatgctattgctcgtgatactggcagttgcactatcgctattgaaaacggaaaa
gtagtttttagcggacataataggattgttacaaagagcaggaagtttggtaatttttat
caacattttcacaattataatttggagtattttgtggacccattacacagcattacaaca
catctttctgctttaattgaagtgaattcacaggcccatcaggatggcattattgctgat
ggtcctgcaacaaaatctggtgtactatctttaggccaaaacattttagttgcttttatg
ccgtggaaaggattgaattttgaagattcagtcatagtttcaaaagaattaataattaat
aaaaaatatgtttcagttcatttagaagaaattgttgttgctgttcaagattctgaattt
ggggtagagatcacaacaaaggatattagaaatagtaagcatgctaatttagactgcaac
ggcatcattttagttggatcggatgttagacctggagaccttattattggcaagcaattt
actaagaaaaaaagatttattaatcaacccgaaaaagatattctccaagccatttttaat
tatgaaagcacaaacataacagacacctccgtcttcgctccgcaagacttcgttggaacg
gttattgatgttaaaatccaaaccaaaatattttctcaagacgagaaactatgtttttcg
atttcaaaccaagatctactatttaaattagctcaacaagaattagaggtgtttagtatt
attaaaatccatctgattaaacttggattagattttgttcaacttaaaaaaatggatcca
tataagtgggtgatcctctgcggacgatcgcccacctttaaatcttatgctaatgctttg
acttcacttttgagctttcaacaaaagatcagagctgagatgcgtgctaagaaaaaaaat
aagatggcagttgagaaacttccaacttctatttcaaaacttattaaaatcattttggca
tctgaaaggcagcttcaaactggtgataaaatggcaggaaggtacggaaataaaggggtt
gtttctaaaatagttgctgctgaaaacatgccgcacctaataactggtcaatcaattgaa
attgtattaaatcctttgggtgttccatcaagaatgaatgttggacaaatatttgaaact
catataagttttcttattaaaataaatgagatgagaattgtaaggaaaaagatggattgg
gtggggcggtgtgctattaattggtatcgtgaggcatcatgccaactaaaacaaaacaat
ctttgggatttaagaaatttaattagctccccctcttttgccacattagaaattcctgca
attaagatttttaatcagaatgaaaacgaaaaactgctttttaatctcaggcaatcaatt
tcttttaaagttgagaagagattaggatgcagtcatcttaaagaccaagtgtttttgatt
gatggaacgagtggggaggaatgttatcttccaactacaattgggtatctttactatttc
aaacttcatcatttagctgaagataaaatgcacgtcagatcaacgggcccatattctaag
atgacacaacaaccacttgctgggaaatcacatgcaggaggacaaaggctgggtgaaatg
gaagtttgggctcttgaagcctatggagcagcatacaatttacacgagatgttaacgata
aaatcagatgatgtttggggtcgttcaaaaatgcagaagggaggggtaattagtaaccaa
ccattactaaccggaatgccagaatcttttaatgttttaattaaagaagctaaagcactc
aacatcgatttaactcccaacccaaaagaaggatga
DBGET
integrated database retrieval system
