Treponema putidum: JO40_00750
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Entry
JO40_00750 CDS
T03278
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpk
Treponema putidum
Pathway
tpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JO40_00750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpk03021
]
JO40_00750
03400 DNA repair and recombination proteins [BR:
tpk03400
]
JO40_00750
Enzymes [BR:
tpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JO40_00750
Transcription machinery [BR:
tpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JO40_00750
DNA repair and recombination proteins [BR:
tpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JO40_00750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
CdiI
Motif
Other DBs
NCBI-ProteinID:
AIN92833
LinkDB
All DBs
Position
complement(164138..168412)
Genome browser
AA seq
1424 aa
AA seq
DB search
MRDIQDFDSLMIKLASPDTIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWEC
FCGKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLNL
QVAALRSVLYYEKYIVIDANDTDLEPMQLLTEDEYRDAHERYGAAFTAGMGAGAIKTLLQ
NINLDELAAQLRAKMIEKGAKSDQRLLRRIEIVENFRASGNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLSKLMELKAPDIIIRNEKRMLQEAVDALFDNSK
RKKAIKGASNRPLKSISDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MALELFKPFIMKKLVQKEVVSNIKKAKLLVEQEAAEVFAVLDEVVSEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCKAFNADFDGDQMAIHVPLTQAAQMECWTLMLSARNLL
DPANGKTIVFPTQDMVLGLYYLTKERALPEGKKERRYSSVAEVLMAAECHAVGWQEPVLI
DYETEPGKIETVRTTPGRILFNEEMPEGVPFTNDALNDKKIRKLIEGVFKAKGPWLAVQL
LDKLKAVGYKYATYFGATLSMEDMIIPPEKAGMLEKANKEVLEIYNQYKGGHITQEERYN
RVVDVWQKTNSNLKEILMNRLQEDKGGFNTIHMMETSGARGSKDQINQLAGMRGLMSKPT
GDIIELPIRSNFKEGLNVMEFFISTNGARKGLTDTALKTSDAGYLTRRLVDIAQNVVVNE
EDCGTINGIEYAAIKRGDEIRESLSERIAGKYTLERVIHPITGELLIDVNEYITDETAKK
IEEAGVETVKLRTVLTCESKHGVCVKCYGRDLARNRIVRIGEAVGIIAAQSIGQPGTQLT
MRTFHEGGTASKNVEENRIVFNDYSIIVRGIKGSYVTLKNGHFLFTRKGEFTFSRVLNEY
ALKKGETPLVSTGTRVVKGNPLYTLKNGKEVLSENIAIAEVRDNIIYLTGQDQTIEIRNG
SEVIVKENEVIKAGETIGTFDPFADPILAEYDGFVRFEDILPGTTLKEEADEETGVVEKR
ISDAHFDKMQPRIFISDESGNPVGEDSYFLPGGAQLLVEEGQEIKAGAILAKIAKESVKT
KDITGGLPRVSELLEARKPKSPAVLAAIAGVVTIKKGLLKGKRTIMVRDEYGHDVKHLVP
IGKRMLVRDGDTVKAGEPLCDGSFDPHDILNILGENALQNYLMKEIKEVYDAQGVTINDK
HVGIIVRQMLRKVKIVSVGDTKFIFDQQIDKYRFHEENKRVKEEGGQPAVARPMFQGITK
AALNIDSFISAASFQETTKVLTNAAIAGSSDELRGLKENVIIGHLIPAGTGMKQYRDIKL
FDKNKSDLDVQMNEILERRRLEAEAAQALEEKELIEEESFLDDI
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgagagatatacaagattttgacagcttgatgataaaacttgcttcacccgatactata
agggcttggtcctacggggaagtaaaaaagcctgaaacaatcaattaccgaaccttgcgc
cctgagagggacggcttgttttgcgaaagaatattcggaactacaaaggaatgggaatgt
ttttgcggaaaatttaaatcaatccgttataagggcgttatctgcgaccgctgcggtgtt
gaggttactcattttaaagtccgtcgtgaacgtatggggcacatagaacttgcagctccc
gtttctcatatttggtattaccgctcggtaccgagccgaatgggacttttgcttaacttg
caggttgcagccctaagatctgttttgtactacgaaaaatacattgttatagatgcaaac
gatacagacttagaacccatgcagcttttaactgaggatgagtacagggatgctcacgag
cgctatggagccgcctttactgcaggtatgggagcaggggctattaaaacccttcttcaa
aacataaatttagatgaacttgcagcccagctccgtgctaaaatgattgaaaaaggtgca
aaaagcgatcaacgccttttacgcagaatcgaaatagtcgaaaattttagagcatcgggc
aacaaacccgaatggatgattcttgatgttattccggttattcctccggatttacgcccc
atggttcagcttgacggaggccgctttgcaacctccgaccttaatgatttatacagaaga
gttatccaccgaaacagccgtttgagtaaactcatggaattaaaggctcccgatattatt
atcaggaacgaaaagagaatgctccaagaagcggttgatgctttatttgataactcaaag
cgtaaaaaggctattaagggagcttcaaatagacccttaaaatcgatttcagacctttta
aagggaaaacagggaaggttccgccaaaaccttttaggtaaacgtgttgattattcaggc
cgatcagttatcgttgtaggccccgagctcaaactttggcagtgcggtttgcccacaaag
atggccttggagctattcaaaccctttataatgaaaaaacttgttcaaaaggaagtcgtt
tccaatattaaaaaggctaaacttcttgttgagcaggaagctgccgaagttttcgctgtc
cttgatgaggttgtaagcgaacatccggttcttttaaaccgtgctccgactctccaccgc
ttgggtattcaggcctttgagcctgttttggtagaaggaaaagctatccgtcttcaccct
ctagtatgtaaggcttttaacgccgactttgacggcgaccaaatggctatccacgttccg
ctgactcaggctgcccaaatggagtgctggacactgatgctttcagcccgaaacctgctt
gaccctgcaaacggaaaaacaatagtcttcccgacgcaggacatggttttaggcctttac
tatcttacaaaagaaagagctttgcctgagggtaaaaaagagcgccgctattcttccgtt
gcagaagttttgatggccgcagaatgtcatgccgtcggctggcaggaacctgttttaata
gattatgaaacggagcccggtaagattgaaaccgtaaggacaacgccgggaagaatccta
tttaacgaagaaatgcccgaaggtgttccatttacaaatgatgcattaaacgataaaaaa
atacgaaaactaatagaaggtgtttttaaagctaagggcccgtggctggctgttcagctt
ttggacaagctaaaggctgtcggttataagtatgctacatatttcggggcaactttgagt
atggaagatatgattattcctcctgaaaaggcaggaatgctcgaaaaggccaataaagag
gttttggaaatatataaccagtataagggcggtcatataacccaagaagaacgctataac
cgcgttgttgacgtttggcaaaagactaactccaatcttaaagaaattcttatgaaccgt
ctgcaagaagacaagggtggatttaacacgattcatatgatggaaacttctggagcgaga
ggttctaaggatcagataaatcagcttgcaggaatgcgcggtcttatgtccaaacctacg
ggagacatcatagaactcccgattagatcgaactttaaagaaggcttaaacgttatggaa
ttctttatttcgactaacggtgcccgaaaaggtttgaccgacacggctcttaaaacatcg
gatgccggttacctgacccgccgtctcgtcgatattgcccaaaacgtagttgtaaacgaa
gaagactgcggtaccattaacggtatagaatatgccgcaattaaacgaggagacgaaatc
cgtgagtccttgagcgagcgtattgccggaaaatacactctggaaagggttattcacccc
attacgggagagcttctcatagatgtaaacgaatatattaccgatgaaacagctaagaag
atagaagaagccggtgttgaaaccgttaagctccgcaccgttttaacctgcgaatcaaag
cacggtgtttgtgttaagtgttacggacgggatcttgcccgaaacagaattgtccgaata
ggggaggctgtaggtattatcgcagcccagtccatcggccagcccggtacacagcttacg
atgcgtactttccatgaaggcggtacggcttctaaaaacgttgaagagaacaggatcgta
tttaacgattattctatcatcgttagaggcataaagggctcttatgtaacactcaaaaac
ggacacttcctgtttacaagaaagggagaatttaccttcagcagggtattaaacgaatat
gctcttaaaaaaggtgaaacacctcttgtaagtacgggaacgagggtagtaaagggcaat
cctctttataccttaaaaaacggaaaagaagtgctttcagaaaatatagccattgccgaa
gtcagggataatattatctatttgaccggtcaggatcagacaatagagataagaaacggt
tccgaggttatagtaaaagaaaatgaggttataaaggccggagaaacaatcggtaccttc
gacccctttgcagatcctattttggcggaatatgacggttttgttcgatttgaggatatt
ttgcccggaacgaccctaaaagaagaagctgacgaggaaactggtgttgtcgaaaaacga
ataagcgatgctcactttgataagatgcagccccgtatctttatttcggatgaatcgggt
aaccccgtaggtgaagactcttacttcctccccggaggtgctcagcttttggttgaagaa
ggtcaagaaattaaggcaggtgcaatccttgcaaagatagcaaaagagtcggtaaagaca
aaggatattaccggaggtcttcctcgagtttcggaacttcttgaagcgcgaaagcctaag
tcccctgccgttcttgcagctattgcaggtgttgttaccattaagaaaggcttactcaag
ggtaagagaactattatggttcgggacgaatacggccatgacgtaaaacacttggttcct
atcggaaagagaatgcttgtccgtgacggagatacggtaaaagccggtgagcccttgtgt
gacggcagctttgatccgcacgatattttaaatatccttggtgagaacgctcttcaaaac
tacttgatgaaggaaatcaaagaagtctatgatgctcagggtgttaccataaatgataaa
catgtgggtataatcgtacgccagatgctccgaaaggtaaagattgtttcggttggagat
accaagtttatctttgaccagcagatagataaataccgcttccacgaagaaaataagagg
gttaaggaagaaggcggtcagcctgccgttgcccgtcctatgttccaaggaattacaaaa
gctgccttaaatatcgactcctttatttcggcggcctctttccaagagactacaaaggtt
cttacaaatgccgctattgcaggttcatcggacgagcttcgcggtctaaaggaaaacgta
attataggccatctaattcctgccggaaccggtatgaagcagtaccgcgacataaaactt
tttgataaaaacaagagcgacttggatgttcagatgaacgaaatccttgaacgccgaagg
cttgaagccgaggctgctcaagctcttgaagaaaaagaacttattgaagaagaaagcttc
ttggacgatatctaa
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