Treponema putidum: JO40_01095
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Entry
JO40_01095 CDS
T03278
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpk
Treponema putidum
Pathway
tpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO40_01095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpk03019
]
JO40_01095
03009 Ribosome biogenesis [BR:
tpk03009
]
JO40_01095
Enzymes [BR:
tpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JO40_01095
Messenger RNA biogenesis [BR:
tpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JO40_01095
Ribosome biogenesis [BR:
tpk03009
]
Prokaryotic type
rRNA helicases
JO40_01095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIN92892
LinkDB
All DBs
Position
complement(237619..239331)
Genome browser
AA seq
570 aa
AA seq
DB search
MLITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGL
PLVQELRSNTGKVRALILVPTRELAVQVAGELESFRIEEYPRITTVYGGAAIGPQLRSLK
TGVEIVVGTPGRVMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSQANPEARV
LMFSATMPKQILTIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTS
PDFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATD
VAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGIAVSFVRPNEVKRIEYLRKH
ARGELKEGKIPSIEQVIEIKRTRILKETAAQIEKKMNEEKPEQGFAAFANKLTEYGDAQT
VLSFILQMQYGSFLSPAHYKTIKPVRSEGRARKSDDDFLRLYIGVGRKDGITKRKLAEML
SRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDIKSESPKSSGR
IGKGKLGQKRKNGTQRKKESLGSASKYKRK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgttaattacttttaaagaactgggacttgacgatatagtcctgcaagcagttgaagcc
aagggttttgaagaacctactcctattcaggttttggctattccccgtcttctttcagga
gaagcaaatgttatcgctaaggcccggacaggaacgggaaagacggccgctttcggcctt
cctcttgtgcaggagctgcgttcaaataccggaaaggtgagagcccttattttagttcct
accagagagcttgccgttcaagttgccggtgaacttgagtcttttaggattgaagaatat
ccccgtatcacaaccgtttacggtggagcggcgataggccctcaactcagaagtctaaaa
accggcgttgaaatagttgtaggaacacccggccgcgtaatggatcatcttgaacggggc
tccctaaaaattgaagatatagaatattttattttggatgaagccgatgagatgcttaat
atgggctttatcgaagacatagaaaatatcttttcacaggcaaatcctgaagcccgtgtt
ttaatgttttcggcgacgatgcccaagcagatactaactatagcttccgactttatgggg
gactatgaaattgtcgaagaagaacctcaagaagaaagagcatctttaacggaacaattt
ttttgggtcgtaagggaaggggataaaaccgaagcccttgtccgtcttatagatacaagc
cctgacttttacggcctcgtattttgccaaacaaaaatcgatgccgatgatgttgcaaag
gagcttgacgaaaggcattatgaagctgccgccctccacggagatattcctcaaagccaa
agggaaaaaatattggaacgctttagatcgaaaaagacccgcattttggtcgcaacagat
gtagccgcacggggtatagacatcgaaggcatttcccatgttgtaaactatgcaattcct
tatgacgggccgacttatacccaccgtataggaagaacgggacgagccggagcggcaggg
attgccgtcagctttgtacggcctaatgaggtaaaaagaatagagtacctgcgcaagcat
gcccgcggagaattaaaagaaggtaaaattccttcaatcgagcaagtcatcgaaatcaaa
cgtacacgtatcttaaaagagacggctgcccaaatcgaaaaaaagatgaatgaagaaaaa
cctgaacagggctttgccgcctttgcaaataagctcaccgaatacggagatgcccaaaca
gtcctctcctttattcttcaaatgcagtacggctcatttttatcgcctgcacattataaa
acaataaagcctgtgcgctccgaagggagggctcgaaaatcggatgacgattttttgcgc
ctttatataggtgtaggccgaaaggacggcattacaaagcgcaaacttgccgaaatgcta
agccgtcttctttcaatacctgagaggcttgtagatgatatagaggttatggataagttt
tcccttgcgacaatgcctaaaaatgccgcaaatgatgctctgcgcctttgtaaaaagaaa
agaggcctgcctcatatgcatattgacataaaaagcgaaagccccaaatcttcgggccgt
atcggcaaaggcaaactggggcaaaaacggaaaaacggaacacaaaggaaaaaagaaagt
ctaggttccgcctcaaagtataagcggaaatag
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