Treponema putidum: JO40_01435
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Entry
JO40_01435 CDS
T03278
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpk
Treponema putidum
Pathway
tpk03410
Base excision repair
tpk03430
Mismatch repair
tpk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JO40_01435
03430 Mismatch repair
JO40_01435
03440 Homologous recombination
JO40_01435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpk03400
]
JO40_01435
DNA repair and recombination proteins [BR:
tpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JO40_01435
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JO40_01435
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JO40_01435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Choline_kin_N
Toprim
Motif
Other DBs
NCBI-ProteinID:
AIN92948
UniProt:
A0AAE9MWH9
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All DBs
Position
complement(313604..315727)
Genome browser
AA seq
707 aa
AA seq
DB search
MDWQKKEIGPELVNEIKRKYGCDPLTSAILVRRGIIEGKDILFYLEDDMRYLHSPFLFKN
MEDAVDRILDAKEEGEKVLIFGDRDVDGITSTTLLYEALKDMGLDVSWRIPTGDESYGLS
IEAVEKHAANDGTLIITVDCGISNFKEIERANSLGIDVIVVDHHTPQESVPDAAVIINCK
MPDSGYPHENLSGCATAWKLITAIRFGMQPFYKQQVSLLNVRPVNDAYSIEAVKLVNMVQ
IGKITETVVPGMLSFSETRLGSFLNGQQIFVWDAPLQKKQLKNIFGNGIEFNFFDFQPEV
AKQFPQMGDMSLLRLKEFSTIGKYYEQAQSELETFKNIFITFVQQKNSFYGKREASEIQL
VALSTLADLMELTGENRIIVKQGLKEINKKPRLGLVDLMAMQKLLGAPIGTEDIAWSISP
LVNASGRMGRPETAVELFLAQDSGERTAKAQEIFQMNEDRKALGSKAWEIALPLAEKSLK
EYNEKLVLAVSAEFHRGITGILAGRLAEYFKLPALAICLMPDGSAVASIRSARGFRLLDF
LEPYSELFLDYGGHDFAAGFGIEQEKLGRFLQNLKQFSQSMEFESDANSETLIIDAELPH
DYLKPEILNLVDKFEPYGCNSPALTFMTKRVKILNANIIGKAEPLHLRFNLECGKYKWNA
LYWKAADKLGTEFKVGDYADIVFNVSKNYFNGAVTPKMVIRDLKKID
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggactggcaaaaaaaagaaatcggccccgaacttgtaaacgagataaaaagaaaatac
ggttgtgatcctctgacttcggcaatattggtgcgccgcggtattatcgaagggaaggat
atactattctatttggaagacgatatgcgctatcttcacagtccctttctatttaagaac
atggaggatgccgtagaccgtatcttagatgcaaaagaagaaggcgagaaagtattgatt
ttcggagatagggatgtggacggtattacaagcacgacccttctttatgaagccttaaaa
gatatggggcttgacgtgtcatggcgtattcctaccggagatgagagctacgggctttct
atagaagccgtagaaaagcatgctgcaaatgacggcactcttattataacggttgactgc
ggcatttccaattttaaggaaattgaaagagctaatagtttaggtattgatgtaattgta
gtcgatcatcataccccgcaggagagtgtaccggatgcggccgtaataataaactgtaag
atgcccgattcgggctacccccacgaaaatttatcgggctgtgctacggcatggaaactt
attacggcaatccgtttcggaatgcagcccttttataaacagcaagtttcccttttaaat
gtgagacctgtaaatgacgcctactcgatagaagcggtaaaacttgtaaatatggttcaa
atcggaaaaattaccgaaacagtagttccgggtatgctttctttttctgaaacaaggctc
ggctcttttttaaacggtcagcaaatatttgtatgggatgctcccttacaaaaaaagcag
cttaagaacatcttcggaaacggaattgaatttaatttttttgattttcagcctgaggtt
gcaaaacaatttccccaaatgggagatatgagccttttgcgtttaaaggaattttcgaca
atcggaaaatattatgaacaagcccaatccgaactcgaaacttttaaaaacatttttata
acctttgtacagcaaaaaaacagcttttacggaaagcgggaggcttcagaaattcagctg
gttgccctctcgacccttgccgaccttatggaactgacgggagaaaaccgcattatagta
aaacaaggtttaaaagaaataaacaaaaaaccacggctggggcttgtagatctgatggct
atgcaaaaacttttaggggctccaataggcaccgaagatatagcatggagtatttctccc
ttggtaaacgcctccggcagaatgggtaggcccgaaacggctgttgagctttttcttgct
caagattcgggcgaaagaacggcaaaggctcaggaaatatttcaaatgaatgaggacaga
aaggcactaggttctaaggcttgggaaattgccctgcctttggccgaaaaaagtttaaag
gaatataacgaaaaattggtacttgcggtaagcgcagaatttcaccgcggaattacagga
atccttgcaggaagattggccgaatactttaaacttccggctcttgctatctgcctgatg
cctgacggcagtgcggttgcctccataaggtcggccagaggtttccgccttttggacttc
cttgagccctatagcgagctttttttagactatggaggccatgattttgcggcaggtttc
ggaattgaacaagaaaaactaggccggtttttgcaaaacttaaagcaattttcacagtca
atggaatttgaaagtgatgcaaattccgaaacccttataattgatgcagagcttccccat
gattatttaaagcctgaaattctaaacttggtagataaatttgaaccttacggatgtaat
tcccctgctttgacctttatgacaaagagggtgaaaattttaaatgcaaatattatcggt
aaagccgaacctcttcatttgcgttttaacttggaatgcggaaaatataaatggaatgcc
ctttattggaaggctgccgacaagctgggtacggagtttaaggttggggactatgccgac
atagtattcaatgtatcgaaaaattattttaacggtgccgttactcctaaaatggttatc
agggatttaaaaaaaatagattag
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