Treponema putidum: JO40_01585
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Entry
JO40_01585 CDS
T03278
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tpk
Treponema putidum
Pathway
tpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO40_01585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpk03019
]
JO40_01585
03016 Transfer RNA biogenesis [BR:
tpk03016
]
JO40_01585
Enzymes [BR:
tpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JO40_01585
Messenger RNA biogenesis [BR:
tpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JO40_01585
Transfer RNA biogenesis [BR:
tpk03016
]
Prokaryotic type
tRNA degradation factors
JO40_01585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AIN92972
LinkDB
All DBs
Position
348196..350292
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AA seq
698 aa
AA seq
DB search
MRKRVTYKIGEHDLILETGHLAKQANGSIYAEYAGSAILATICASGQAQEGLDYVPLTVD
YNEKYYAAGKIPGGFIKREGRPKDKEILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDM
INPPDILAVIASSAAVHISDIPFDGPVAAARVAYKNGEYIINPTFDQIETADMEIVVAGT
KEGITMVEGGANEVSEEVMLTALEKAHEMIKALCKIQEDLRELAGKEKLPLVPLEAELEN
KQAIYDEAFPRLSKTLYLSTKMERRDESDKVKKELAEKYTEQLEDEIQLKLFNALFEEME
YNILRTNILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFD
EQIYDDIEGDRRENFILHYNFPPFSVGEVGRLGTGRREIGHGNLAHRSLYPMVPKREKFP
YTVRVVSEVLESNGSSSMATVCSGTLSMLHAGVPMKKPVAGIAMGLITEGNDRYAILSDI
LGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEGRMHILGIMNQCI
SSPNAELSKYAPRVEMMSIPEDKIGALIGPGGKNVKAISDKYNVTINTENDGTVTIYGKD
GTSDIKGAKLIVKGITSDPEVGMIYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRSRVE
KVSDVLKEGQEIPVKLLEIDKLGRLNLSYIDALEERSK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaagagtaacttataaaatcggcgaacatgatttaattttagaaaccggtcat
ttggcaaaacaggccaacggttctatttatgcggaatatgccggttccgcaattttagct
acaatctgtgcctcgggacaggctcaggaaggtttagactatgtccccctaacggttgat
tataacgaaaaatattatgcagccggaaaaattcccggaggctttataaaaagggaggga
agacccaaggataaggaaatccttgtttcccgccttatagacaggcctatgcgccccttg
tttaacaaagaattcggacgtgaaattcagcttgttcctacctgcatttcaacggatatg
ataaatccgcccgacatccttgcagttatcgcaagctctgcagccgttcatatttcggat
attccctttgatggccccgttgcagctgcccgtgttgcctataaaaacggcgaatacatt
ataaacccgacatttgaccaaatcgaaacggccgatatggaaattgtagttgccggaaca
aaagagggcattacgatggtcgagggcggcgctaacgaagtttccgaagaggtcatgctt
acggccttggaaaaagctcatgaaatgatcaaggctctttgcaagatacaggaagacttg
cgcgaacttgccggaaaagaaaaacttcccctcgttccccttgaagccgagcttgaaaat
aaacaggcaatttatgatgaagccttcccccgtttaagcaaaaccctctatctttcaaca
aagatggaaaggcgcgacgaatccgataaggtaaaaaaagaattggccgaaaaatatacc
gaacagcttgaagatgaaattcagcttaaactttttaatgccctctttgaagagatggag
tataatattttaaggaccaatatcttggacaagggcctacgtgttgacggaagaggcact
aaggacattcgtcccataacctgcgaaatcggagtccttccccgtccccacggttcggct
gtctttacacggggcgaaactcagtccttgggtgtcgtaacgataggaacagtctttgac
gaacaaatatatgatgacatcgagggcgacagaagagaaaactttatccttcactataac
tttccgccattctcggtaggagaggtcggaaggctcggaaccggtcgaagggaaatcggg
cacggaaaccttgctcaccgctccctttatccgatggttcctaagagggaaaaattcccc
tatacggtccgtgtcgtttcagaggtcttggaatcaaacggttcttcttcgatggctaca
gtatgttccggaaccctttccatgcttcatgcaggcgttcctatgaaaaagccggttgcc
ggtattgccatgggacttatcaccgaaggaaatgaccgttatgctattctttcagatatt
ctgggagaagaagatcacttaggcgatatggactttaaggttgcaggaactgccgacggt
attaccggttttcagatggacataaagattgcaggcgtttctcctgaaattatgaaaaat
gctcttgcacaggctaaagaaggaagaatgcacatcctaggcataatgaatcagtgtatt
tcttctcccaatgcagaactttccaaatatgcgccaagggttgagatgatgagtataccc
gaagacaagataggcgccctaatcggccccggcggaaagaatgtaaaagctatttccgac
aaatataatgtaacaatcaataccgaaaatgacggtaccgtaaccatttacggcaaggac
ggaacttcggatattaaaggtgcaaaactcatcgttaaaggaattacaagtgatcccgaa
gtaggaatgatttatgacggaacggtaaaaaagattatggacttcggtgccttcgtcgaa
atccttcccggaaaagaaggcctttgtcatatctcaaaactttcacgctccagagtcgaa
aaggtttcggatgtgcttaaagaaggacaggaaatacctgtaaagcttttagaaattgat
aaactcggaaggctaaacctttcttatatagatgctcttgaagagcgttccaaataa
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