Treponema putidum: JO40_03300
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Entry
JO40_03300 CDS
T03278
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tpk
Treponema putidum
Pathway
tpk03030
DNA replication
tpk03430
Mismatch repair
tpk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JO40_03300
03430 Mismatch repair
JO40_03300
03440 Homologous recombination
JO40_03300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpk03032
]
JO40_03300
03400 DNA repair and recombination proteins [BR:
tpk03400
]
JO40_03300
Enzymes [BR:
tpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JO40_03300
DNA replication proteins [BR:
tpk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JO40_03300
DNA repair and recombination proteins [BR:
tpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JO40_03300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AIN93269
LinkDB
All DBs
Position
691152..694601
Genome browser
AA seq
1149 aa
AA seq
DB search
MAVDFVHLHVHSDFSLLDGAASVKSLAAKAEKLGQTALALTDHGNMFGAINFYNACKEKN
IKPIIGCEFYVAPESRFEKKETPGGKKYYHLILLAKNETGYRNLMVLCSKGYTEGMYYKP
RIDDELLAQYAEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQDH
GIKEEKKAAKLLIEIARKIGIPLVLTNDIHYVEQKDYIAQDILVCIGMKKLRTDTNRMQF
EGSEFYFKSGEEMAKLFPEYPEAVLNTVRIAEMCNLEIPQPGPILPIYEIPEDFSSKEDY
IRHLAEEGLKKRYPVITDKIKERLNYELDIVIKMDFVGYFLIVWDFINWAKNNGIPVGPG
RGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFERRQEVIEYVRQK
YGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTDGVKEVTLKYAV
DVVPELKEMAEDPQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTDYVPLYKDSKTGK
VATQFTMDLIEKCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWEKFSIGDIDYSDAETFK
MLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYINQFIESKFDNSK
IKYPDPCLEDILAETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMGKKKIEVMKTEKE
KFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAYLKAHFPAEFMAA
NLTNEITSTDKLPEYIVEAEKMGLKILPPDVNLSDPYFSVSSDGNIIFGLLGIKGVGMQA
AHELAEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDSLGQERSTLMVNMDGA
VAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEKELMGFYISGHPL
DEYRKVINNSATLDISHLARATSKKKYVLVGMLTGVRQHQTKKGAMMGFGTFEDLNGTLD
LVFFPKTWEKYRPSLLPETVCGFVGSIDNSDGESHSFLVDDVLEIDKLQQKALSEVHIEL
DENITSAKELTGLKDFLYERSGNCDVYIHVKDEDKAYIIKASPQIRIPSTPEFIEELNMQ
FGVEQIWLE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgattttgttcatcttcatgttcattccgatttttctcttttagacggagcg
gcttcggttaaaagccttgcagcaaaggctgaaaagctggggcagactgcccttgcattg
accgatcacggtaatatgttcggggctataaatttttataatgcctgtaaagaaaagaat
ataaagcccataatcggctgcgagttctatgtggctcccgaaagccgctttgaaaaaaaa
gaaactccgggagggaaaaaatactatcacctcatcctattagcaaagaacgaaacagga
taccgtaatttaatggtgctttgttctaaaggatatactgaaggtatgtattataaaccg
cgcatagacgatgagcttttggctcagtatgcggaagggcttatatgcttgtcggcctgt
cttgcaggggagcttcctgttctcttgttaaacggcgaaaaagaaaaggccgaggctcat
gtcagaaaataccgtgaaattttcggtgccgaaaattattttatcgaacttcaagatcat
ggaataaaagaagaaaaaaaggctgccaaacttttaatcgaaatagcccgcaagatcggc
attcctttggttttaaccaacgatattcattatgtagaacaaaaagactatatagcgcaa
gatatcttagtatgtatcgggatgaaaaaacttagaaccgataccaatcgaatgcaattt
gagggaagcgaattttattttaagtcgggagaggaaatggccaaactctttccggaatat
cctgaagcggttttaaacactgtccgcattgcggaaatgtgcaatttggaaattccgcag
ccgggccccattcttccgatatatgaaatccctgaagactttagctcaaaagaagattat
atcaggcatttggccgaggaaggtttaaaaaagcgttatcccgtcattaccgataaaata
aaggaaaggcttaattacgaactcgatatagttataaaaatggactttgtcggttatttt
ttaattgtttgggattttattaactgggcaaaaaataacggcataccggtaggcccggga
cgcggttccggagccggttcaattcttgcatactctttgcgtattacggatatagacccc
ctaaagtataacctcctttttgaacgctttttaaatcccgagcgggtttcgatgcccgac
ttcgacgtagacttttgcttcgaaagacggcaggaggtaatagaatatgtacgtcaaaaa
tacggggacgaaaatgtaggtcagattattacctttggaaccttaaagccaaaggctgtt
gtaaaagatgtgggacgggttttaaatattccgctcgccgatgttaatgctatcacaaaa
ctcatacctcctaaacctctaactgatggagtaaaggaagttaccttaaaatacgctgtt
gacgtagtccccgaattaaaagaaatggccgaagacccgcaatacaaagagctttttgaa
ataagcatagctcttgaagggcgaaaccgtaattcgagtcttcatgctgcgggcatcgtt
ataggtaagactgccttaaccgactatgttccgctttacaaggattcaaaaaccggaaag
gttgctactcagtttacaatggatttaatcgaaaaatgcggccttgtaaagatggacttt
ttaggcttaaaaaccttaaccctcataaagcatactgaagaccttattcataagagaggt
ggagaatgggaaaaattttcgataggcgatattgactattcggatgctgaaacctttaaa
atgcttagcgaaggtaaagcggctgccgtattccaatttgaaagtcagggaatgcaaaat
attttaaagcgcgcaaagccttccaaaatggaagatttgattgctttaaatgctttatac
cgtccgggtcctatggattatatcaaccagtttatcgagtcaaaattcgataattcaaaa
atcaaatatcccgatccctgtcttgaagatatcctagccgaaacttatggggttatcgtt
tatcaagaacaggttatgcaggttgcacaaagaatagcaggctattccctcggtcaagcc
gacatactccgccgtgctatgggaaagaaaaaaattgaggttatgaaaaccgaaaaagaa
aagtttattaagggtgcacaagagaagggcttcagcagggaagacgccgacaggattttt
gagattcttatcccctttgcaggctatggctttaataagagccacgcagccgcttactcc
gttttagcctttcaaacagcctatttaaaggctcattttccggcagaatttatggcagct
aaccttaccaacgaaattacctctaccgacaagcttcctgaatatattgtcgaagccgaa
aagatggggcttaaaattcttccccccgatgtaaatttatccgacccatattttagtgtt
tcctccgacggcaatattatcttcgggcttttgggaataaagggagtcggaatgcaggct
gcccatgaacttgctgaagagcgcgaaaaaaacggcagatataagtcatttatcgatttt
ttggagcggaacgatctgcacactcaaaataagcgtaaccttgaagttatgattaaaacc
ggctgctttgatagtttgggacaggagcgttctaccttgatggtaaatatggatggggcc
gtggcttacgcttctcaaaaaaaagaaaatgaaagtaccggtcagggcagtctttttgaa
ggttcgggcataaaagaattttcggactttgtttttgaaaaaatcgaagagttccccaaa
aaagaaaaactccgcctcgaaaaagagctcatgggcttttatatttcggggcaccctctg
gatgaataccgcaaggtaataaataattctgccaccttggatatttcccatcttgcccgc
gccacctcaaaaaagaagtatgttcttgtaggaatgcttaccggagtcaggcagcatcaa
acaaaaaaaggtgcgatgatgggcttcggaacctttgaagacctaaacggaacattagat
ttggttttctttcccaaaacatgggaaaagtatagaccttcccttttgcccgaaacagta
tgcggctttgtgggttctattgataacagtgatggcgagtctcattcctttttggtagac
gatgttttggaaatagataaattgcagcagaaggctttaagcgaggttcacattgagctt
gatgaaaatataacttctgcaaaagagttgaccggtttaaaggattttttatatgagagg
tcaggtaactgcgatgtttatattcatgtaaaggatgaggataaggcttatataattaag
gcttctcctcaaatccgtataccatcaactcccgaatttatagaagaattaaatatgcag
ttcggggttgaacaaatttggcttgaataa
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