Treponema putidum: JO40_04385
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Entry
JO40_04385 CDS
T03278
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tpk
Treponema putidum
Pathway
tpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO40_04385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpk03019
]
JO40_04385
Messenger RNA biogenesis [BR:
tpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JO40_04385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
KH_2
SPAN
Motif
Other DBs
NCBI-ProteinID:
AIN93443
UniProt:
A0AAE9SK58
LinkDB
All DBs
Position
923207..924736
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AA seq
509 aa
AA seq
DB search
MNWILYVILPAVCVILGWTIRWLYARFQLSASEQRAERILQEAIKDAEAQKKEFFLEAKE
QLIREQKQQERENRERRSDLQRFERRLTQKEEILDKRVETVEKQEKELVKREAALDERTE
FLSGEEERYREELEKISGLTQQQAKDLIIRDLETEAKHDAVTIINKIEQEAQLTAEKKAR
DILITTIQRLATETASDITVSTVSLPSDEMKGRIIGREGRNIRALETLTGVDIIIDDTPE
AVVVSCFDPVRKEIARVALERLILDGRIHPARIEEIVQKVTREISQKVYEEGEKVLFDLG
IHNMNQEGVRALGRLYFRTSYGQNVLQHSKEVAIIAGMIASEIGANVEIAKRGALLHDVG
KGAETDSDKNHAEIGMELAKKINEDPRVVNAVGAHHNDIEPTCIESVIVQIADAISAARP
GARRETMDNYVKRLENLEQLAEGFSGVEKAYAIQAGRELRVVINNEKISDADTKILARDI
AKKIENDLQYPGRIRVTLIRETRIVEYAR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaattggattttgtatgtcatccttcctgctgtctgtgtaattcttggatggacgatt
cgctggctttatgccagatttcaactatctgcttctgaacaacgtgcagaacggatttta
caggaggcaattaaagatgccgaggctcaaaagaaggaattctttcttgaagcaaaagag
cagctgattcgggaacaaaaacagcaggaacgggaaaatagggaacgccggagtgatctc
cagcgcttcgaacgcaggttgacacaaaaagaggaaatcctcgataaacgtgtcgaaact
gttgaaaaacaagaaaaagagcttgtcaagagggaagccgcacttgatgagcggacggaa
tttttaagcggtgaagaagaaagatacagggaagaattggaaaaaatttccggtttgacc
cagcagcaggcaaaagatttgattatccgcgatttggaaactgaagcaaagcatgatgca
gttactattataaataagatagaacaagaagctcagttgacggcagaaaaaaaagcgagg
gatattctaattactacgattcaacgtcttgcaacggaaacggccagcgacattactgtc
tcaacggtcagcttgcccagcgatgagatgaaaggaaggattatcggccgcgagggacgc
aatatccgagccttggaaactcttaccggtgtggacataattatcgatgatacccctgag
gctgttgtagtatcttgttttgaccctgtgcgcaaagaaattgcaagggttgctttagaa
agattaattcttgacggccgaattcatccggcacgtattgaagaaatcgttcaaaaggta
accagagaaatttcgcaaaaggtttatgaagaaggagaaaaggttctatttgacctaggc
atccataacatgaaccaagaaggcgtaagggcattgggaaggctttattttagaacaagc
tatggacaaaatgtgcttcagcattctaaagaagtagccataatcgcgggaatgattgca
agcgaaatcggtgcaaacgtcgaaatagcaaagcgaggcgccttgctgcatgatgtcgga
aagggtgcagaaaccgattccgataaaaaccatgccgaaataggaatggaacttgcaaag
aagatcaatgaagatccgagggttgtaaatgccgtaggcgctcatcataatgatatagaa
cctacttgcattgaatcggtaattgtacagattgcagatgcgatttcagccgcccgtccg
ggcgcaagacgagaaactatggataactatgttaagcgtcttgaaaaccttgagcagctg
gctgaaggttttagcggagttgaaaaggcctatgcaatccaagccggaagggaattgagg
gttgttatcaacaacgaaaagatttccgatgccgataccaagattttggcccgggacatt
gcaaaaaaaatcgaaaacgatttgcagtaccccggaagaatccgcgtaacccttatacgc
gaaacacgtatcgtagaatacgcccgctaa
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