Treponema putidum: JO40_06490
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Entry
JO40_06490 CDS
T03278
Name
(GenBank) helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tpk
Treponema putidum
Pathway
tpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO40_06490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpk03019
]
JO40_06490
03400 DNA repair and recombination proteins [BR:
tpk03400
]
JO40_06490
Enzymes [BR:
tpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JO40_06490
Messenger RNA biogenesis [BR:
tpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JO40_06490
DNA repair and recombination proteins [BR:
tpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JO40_06490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
Helicase_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIN93798
LinkDB
All DBs
Position
complement(1367971..1369674)
Genome browser
AA seq
567 aa
AA seq
DB search
MKNQNLQEADEPYIWDDTPDDLCCPFVCETDNPEYSLEKTEDAVAVCAKNVFGIPSLYPW
QRLAIANILDAVHAVEARIEAEQTETKKKNGEDSGKDEKTKLLQKITANTEEEKITSLYD
EDGTMRGRQIILLPTGAGKSLCFQVPALLLDGPTVIIYPLLALMSDQFRRMAEGGLEPVI
FKGGQTKEEREAQLARMEGSDGKPPAKLIIANPEVLSGGTLIDRIAACNVVHLAIDEAHC
VTEWGDSFRPAYLELTNIIKKLHPFAVSAFTATASPPVLQRIAEILFEGRAHLVRGESDR
TNIIYFVKHCRVKNPALLEEVQKRKRPMVIFCSSRKGTEQTASFLRLRLNDENIRFYHAG
LEREEKAETEKWFHEHKSGILICTCAWGMGVDKKDVKTVIHMDPSPTAEAYIQEAGRGGR
DGSIAEAVLLWSPADKKRIELLPEKQRLRAGVLKDFAESGKCRRAVLLKALGETRAEASN
PDEEVIACSGCDICNKTAVQYPEDEKLFIKFIKANKRIFTQNEAIDFFSSKKTFWEAGDV
KRLSAELLEEGLIKKLKTPLWKDKLSI
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatcaaaatttacaagaagccgatgagccgtacatatgggatgatacgccggac
gacctttgctgcccctttgtttgcgaaaccgataatccagaatacagcttagaaaaaacc
gaagatgccgttgccgtctgtgcaaaaaatgttttcggtattccgtcgctctatccttgg
cagaggcttgcaatagccaatatcttagatgcggttcatgcagtggaagcccgtattgaa
gccgaacaaactgaaaccaaaaagaaaaacggtgaagattccggcaaagatgaaaaaaca
aaattgctgcaaaaaattaccgccaataccgaagaagaaaaaataacttcgctttatgat
gaggatggaactatgaggggaaggcaaattattctccttcctacaggagcgggaaagtct
ttgtgctttcaggttcctgcccttctgctggacgggcctacagtaatcatctatccactt
ctagcccttatgagcgatcagtttaggcgaatggcggagggagggcttgagcctgtcatc
tttaagggagggcaaactaaagaagaaagagaagcccagcttgcacgcatggaagggagc
gacggcaagcctcctgcaaagctcataattgcaaaccccgaagttctttcaggcggaact
cttatagataggattgctgcctgcaatgtggttcacttggcgatagacgaagcacactgt
gttaccgaatggggagacagttttaggccggcctatcttgagcttacaaacataatcaaa
aagcttcatccattcgccgtttcagcttttacggcaacggcgagtcctccggttttacag
cgtatagccgaaattctttttgagggcagggctcatttggttcgaggcgaatcggacaga
acaaatataatttattttgtaaagcattgcagggtaaaaaatcctgcccttctggaagag
gtgcaaaaaagaaaaagacctatggtcatcttttgctccagccgaaagggaacggaacag
acagcttcatttttgcgccttcgcttaaatgacgagaatataagattttatcatgcaggc
ctcgaaagagaagaaaaggccgaaaccgaaaaatggttccatgaacataaaagcggtata
ctgatatgtacatgtgcttggggaatgggtgtcgataagaaggatgttaaaactgtaatt
cacatggatccttctcctactgccgaagcctatattcaagaagcaggaaggggcgggcgg
gacgggagcattgccgaggcagttctgctatggtctcctgccgacaaaaaaaggatagag
cttttgccggaaaaacagcgtcttagggcaggtgttcttaaagactttgccgaaagcgga
aagtgccgcagggcggttctattaaaggccctcggtgaaacaagagcagaagcttccaac
cccgacgaagaagtaatagcctgttcgggctgcgatatttgtaataaaacggcggttcaa
tatcccgaggacgaaaagctttttataaaatttataaaagcaaataaaagaatttttact
caaaatgaagcaatcgattttttttcttcaaagaaaacattttgggaagcaggggacgta
aagcgtttaagtgctgagcttctcgaagaggggcttatcaaaaaattgaaaacccctctt
tggaaggataagcttagtatttag
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