Treponema putidum: JO40_08015
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Entry
JO40_08015 CDS
T03278
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpk
Treponema putidum
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpk03016
]
JO40_08015
Enzymes [BR:
tpk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JO40_08015
Transfer RNA biogenesis [BR:
tpk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JO40_08015
Prokaryotic type
tRNA splicing ligases
JO40_08015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RhsPI
SspH
DUF6364
SF0329
Motif
Other DBs
NCBI-ProteinID:
AIN94058
LinkDB
All DBs
Position
complement(1684107..1685234)
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AA seq
375 aa
AA seq
DB search
MQIIEGTYNNASVMIDSIDSETEKQIKTFLNHKAFEGTNIAIMPDCHAGKGAVIGFTMNI
DKYIIPNIVGVDIGCGILSARLSIKNPDLAELDNFIKKNIPHGRAVHQNIKIDNKEFEEE
IIEESKKVHMDEDRALKSIGTLGGGNHFIELGKDSQGKLWLTVHSGSRNLGLQIAGFYQK
KAQQLLDEQKLLTPEDKNLEYLFTESDEGKAYLRATYFAQKYAKENRKKMIELISQFLNT
EIEETVESVHNFIGEDGIIRKGATSAGLNERLILPFNMRDGFAFCIGKGNDDYNQSAPHG
AGRIMSRSKAFNELSLKDFQKEMKNAGIFTTTATKNTLDEAPSAYKNKEIILKHIKPTAD
IKDFVKPIYNFKAPN
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgcaaataattgaaggaacatacaacaatgctagtgtgatgatcgattcaatcgattct
gaaaccgaaaaacaaattaaaacttttctcaatcataaggcctttgaaggcacaaatata
gcaataatgccggactgtcatgcaggtaaaggagccgttatcggttttacaatgaatata
gacaaatacataatcccaaacattgtaggtgtagatatcggctgcggaattctttcggcg
cggcttagtataaaaaatccggatcttgcagaactggacaactttatcaaaaaaaatatc
cctcatggcagagccgttcatcagaatataaaaatagacaataaagaatttgaagaagaa
attatagaagaatcaaaaaaggttcatatggatgaagatagggctttaaaaagtatagga
acattaggaggcggaaatcattttatagagcttggaaaagattctcaaggaaaactgtgg
ctcacggttcattcgggaagcagaaacctaggccttcagattgccggtttttatcaaaaa
aaagcacagcagcttttagatgaacaaaaacttctcacgcctgaagataaaaatttggaa
tatttatttacagaaagtgatgaaggaaaagcttatttaagagcaacctattttgctcaa
aaatatgcaaaagaaaaccgaaaaaaaatgatagaattgatctcacaatttttaaatacg
gaaattgaagaaactgtagaatcggttcacaattttataggtgaggacggcatcatccga
aaaggagcaacttccgccggattaaatgaaaggcttattcttccttttaacatgcgtgac
ggatttgcattttgtatagggaaaggaaatgatgactacaaccaatcggctccacatgga
gcaggaagaattatgtcccgctccaaagcatttaacgaactttcactaaaagattttcaa
aaggaaatgaaaaatgccggaatatttacaacaactgcaacaaaaaacaccttagatgaa
gctccatcagcttataaaaataaggaaataattctaaaacacattaagccgactgccgat
ataaaagattttgtaaaacctatatataacttcaaagcacccaattag
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