Treponema putidum: JO40_09475
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Entry
JO40_09475 CDS
T03278
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
tpk
Treponema putidum
Pathway
tpk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JO40_09475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpk03400
]
JO40_09475
DNA repair and recombination proteins [BR:
tpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JO40_09475
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JO40_09475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
AAA_22
UB2H
Kinesin
HPF1
SWI2_SNF2
SLFN-g3_helicase
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AIN94302
LinkDB
All DBs
Position
complement(1977890..1979878)
Genome browser
AA seq
662 aa
AA seq
DB search
MKQFKLISDYKPSGDQGEAIKALSEGIIAGDKFQTLKGVTGSGKTFTMANIIQAVQKPTL
IISHNKTLAAQLYREFKTFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDASINDEIDR
LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGVNIEIEKLKKQLISLQY
ERNDAVLERGRFRVKGDVMEIFPAYMEDAYRLEFDWEEIVRIRKFNPISGEVIQEYEELS
IYPAKHFVMPEDAIPNALERIKKELEERLNVLNKEGKLLEAERLKTRTEYDIEMLSEMGY
CPGIENYSAPIANRKPGEPPATLFHYFPDDFLLFMDESHVTFPQVGAMYEGDRSRKQNLV
DFGFRLPCALDNRPLKIEEFEKMLNQAVFVSATPGPKELKYSTRIVEQVIRPTGLLDPII
EIHKSDGQMEHIYGEVKKRIALNERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETI
ERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLIQIVGRAA
RNENGKVVMYADRISDAMKETIEETNRRRAIQEAYNKEHGITPKTIKKAIEDILTRENEI
KKEAALAEAGPLINSLNILNPADRKKLIKKLEAQMAEYADMLMFEEAAVIRDKIEEVRRI
GS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatttaaacttatttcggattataaaccttcaggagatcagggagaagctatc
aaggccctttcagaaggaataattgcaggcgacaaatttcaaacgctcaaaggtgttacg
ggatcgggaaaaacttttacaatggcaaatattattcaagccgtacaaaagccgacccta
atcataagccacaataaaacccttgccgcccagctttacagagaatttaaaacctttttc
ccggaaaacgccgtcgaatattttgtttcatattatgactactatcagcctgaagcctat
gttcccgcacgcgacctttatatagaaaaagacgcttcaataaatgacgagatcgaccgc
ctccgcctatcggcaaccttcagccttatggaacgccgagatgtaatcgtcgtttccacc
gtttcctgtatttacggtttggggcttcccgaatcgtggcgggacttacgcataaccata
gaaaagggcgtaaacatcgaaatcgaaaaattaaaaaaacaattgataagtttgcaatat
gaaagaaacgatgcagtccttgaaagaggccgcttccgcgtcaaaggagacgtaatggaa
atttttccggcctacatggaagatgcttaccgtcttgaattcgattgggaagaaattgta
cgcatcagaaaattcaatccgatttcgggtgaggtaatacaggaatatgaagagctttca
atttatcctgcaaaacactttgtaatgcccgaagatgcaattccaaatgctcttgaaagg
ataaaaaaagaattggaagaaagactgaatgttttaaataaagaaggaaaactccttgaa
gcggaaaggctaaaaacccgcaccgaatacgatatcgaaatgctttccgaaatgggctat
tgccccggcattgaaaactactctgccccaatcgcaaaccgaaagcccggagagcctccc
gctaccctcttccattattttcccgatgactttttattattcatggatgaaagccatgta
acctttcctcaagtaggagcaatgtacgaaggcgaccgcagccgcaaacaaaatcttgta
gacttcggcttccgtcttccgtgtgccttagataaccgcccattaaaaattgaagagttt
gaaaagatgctgaatcaggccgtttttgtttcagcaacgccggggccgaaagagcttaaa
tactctacccgcatagtcgagcaagtaatacgccccactggtcttttggatccgattata
gaaattcataaaagcgacggccagatggagcatatttacggtgaggtaaaaaaacgtatt
gccttaaacgaaaggagcctcatcttaaccctcacaaaaaaaatggcggaagacttaacc
gattatcttacagggctcggtcttaaagtaaaatatattcatagcgaagttgaaacgatt
gaaagagtcgagattttaaaaggcttgcgtgcaggagaatttgatgtgcttataggaatc
aacctattgcgcgaaggaatcgatttaccggaagtttcttttatcggaattctcgatgca
gataagataggctttttgcgttctactacaagtcttattcaaattgtaggcagggcagcc
agaaacgaaaacgggaaagtagttatgtatgccgacagaataagcgatgctatgaaagaa
accatagaagaaacaaaccgccgccgtgctattcaggaagcctataacaaggaacacggt
ataacacccaagacaataaaaaaagcaattgaagatattttaacgcgggaaaatgaaatt
aaaaaagaagcggcccttgcagaagccggcccccttatcaacagcctaaacattttaaac
cctgccgacagaaaaaaacttatcaaaaaacttgaagctcaaatggccgaatatgccgac
atgctcatgtttgaagaagcagcagtcataagagacaaaatagaagaagtaaggcggata
ggaagttaa
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