Treponema putidum: JO40_09485
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Entry
JO40_09485 CDS
T03278
Name
(GenBank) hypothetical protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tpk
Treponema putidum
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpk03016
]
JO40_09485
Enzymes [BR:
tpk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JO40_09485
Transfer RNA biogenesis [BR:
tpk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JO40_09485
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
DUF4200
Motif
Other DBs
NCBI-ProteinID:
AIN94304
LinkDB
All DBs
Position
complement(1981413..1983284)
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AA seq
623 aa
AA seq
DB search
MNTNAIVLYKNRPALIKGQADGKFEIETETGIKKVREKDFSVLAPNNSSSLKNILTASCP
EPDFNEAADFFEEGTALFSEISELVWENLNPEQMWAAWLLVSASPLFITESPDLPIKIRT
KEEAEAIAAAALKKETEKQAEEKERKEFITGLSKFIKEKKEEIFDLIKYSHFLQEIEALA
LEKTDKSKLLSEAHLKETPESAHKILIKTGYWKIEKNPYPTRFKHPLNSPKLELPPIEHN
KKYEDLTHLTAYAIDNEGSTDPDDAVCFDGEHLWIHIANPADIITPDSKSDMDARKRGAT
LYIPEGVSRMLGESAVDAFALGLHDDSYALSFKLKLNESAEILDVDILRTKIKVNCISFE
KADEEKMSASLSPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENENQKVFISPYNFTK
SFLMVKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELPKKLPEGLAGEYRKRKAMRPRNV
GTIPAMHSALGIATYSQVTSPLRRYGDLVAHQQLLKFIDGKEVMKTDDLLMRIAAGDIAG
KNCSYAERASRQHWTLIYLLQNPNWQGEAVILETIKNTARISIPSIGYETEMRLKKELSV
NERINVKAEDIDIPNLTVRFVQV
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaatactaatgcaatcgtcttatataaaaaccgtccggctcttataaaaggacaggct
gacgggaaatttgaaatagaaacggaaacgggcatcaaaaaggtgcgcgaaaaagatttt
tccgttttggctccaaataattcctcatcattaaaaaatattttaaccgcttcctgtccc
gaacctgactttaatgaagccgcggatttttttgaagaaggaaccgccctcttctctgaa
ataagcgaattggtttgggaaaatttaaacccggaacaaatgtgggcggcttggctttta
gtttcagcctcccctctttttattacagaaagccctgaccttccgattaaaataagaaca
aaagaagaagctgaggccatagccgctgctgcactaaaaaaagaaaccgaaaagcaggca
gaagaaaaagagcgtaaagaatttataaccggcttatcaaaatttataaaagaaaaaaaa
gaagaaattttcgacttaataaaatactctcattttttgcaggaaatagaagccctagcc
ttagaaaaaacagacaagtcaaaactcttaagcgaggctcacttaaaagaaactccggaa
tcggcccataagattttaattaagactggatattggaaaatagaaaaaaatccctacccc
acccgttttaagcatccgctaaattctcctaagcttgaattgccgcccattgagcataat
aaaaaatatgaagaccttacccatcttacagcctatgccatcgacaatgaaggcagcact
gatcccgacgatgccgtatgctttgacggagaacacttatggattcatattgcaaatccg
gccgacatcattacacccgattccaaaagcgacatggatgcaagaaagcgaggggcgact
ttgtacatccctgaaggtgtttccagaatgttgggagaatcggcagtcgatgcctttgcc
ctcggcctgcatgatgactcttatgcactgtcgtttaaacttaagctaaatgaatcggca
gaaattctcgatgtagatattttgcgtaccaagataaaagtcaactgcataagttttgaa
aaggccgatgaagaaaagatgagtgcaagtctgagccccctctttgaaatagccgaaaaa
aacagaaaaaaacgggaagcggccggggcagtttcgatagacatgccggaagttcaaatc
aaagtagaaaccgaaaatgaaaatcaaaaagtttttataagcccgtataactttacgaaa
tcttttttgatggtaaaagaaatgatgctccttgcaggagaggcggctgcccgctttgct
tttaaaaataatattccgtttcagtatgtaagtcaggaagctccagaattaccgaaaaaa
cttcccgaggggcttgcaggcgaataccgaaaaagaaaagctatgaggccgaggaatgtg
ggcacaattcctgcaatgcactcagccctcggaattgcaacgtacagtcaagttacaagc
cccctccgccgctacggagacttggtcgcccatcaacagcttttaaaatttatcgacgga
aaagaggtgatgaaaaccgatgaccttcttatgagaatagcggcaggagacattgcaggc
aaaaattgttcctatgccgaaagagcctcgcggcaacactggactctgatctatctttta
caaaaccctaactggcaaggagaagccgtaatcttagaaaccataaaaaacacggcccgc
atttccattccgtctatcggctatgaaaccgaaatgagattaaaaaaagaattatccgtc
aatgaacgcataaacgtaaaagcggaggacatagatattccgaatctgactgtaagattt
gtgcaggtataa
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