Treponema putidum: JO40_11780
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Entry
JO40_11780 CDS
T03278
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tpk
Treponema putidum
Pathway
tpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO40_11780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpk03021
]
JO40_11780
03019 Messenger RNA biogenesis [BR:
tpk03019
]
JO40_11780
Transcription machinery [BR:
tpk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JO40_11780
Messenger RNA biogenesis [BR:
tpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JO40_11780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA
OB_RNB
AAA_25
ResIII
AAA_14
S1CSD-TOTE-2
Phage_RpbA
Motif
Other DBs
NCBI-ProteinID:
AIN94679
UniProt:
A0AAE9MUZ3
LinkDB
All DBs
Position
complement(2428762..2430408)
Genome browser
AA seq
548 aa
AA seq
DB search
MTIRKRKALPQVSEDSLFDTGSNSNEDLVISTSDEQTDDLSVNTANEIQAAVEQTRIEQN
KEADDEILEKKVVVRSRGRKRTVNSSDEVETKPAKKTSLPAKKRLPRDIQDEKDEIIPEP
DTSFKIIINDLTKMRMHDLRDMAVKYGVPEDELSLMKKQDVIYHILKNHTNQGGSIFASG
SLETLPDGYGFLRSPQNSYLTGTDDVYVSPSQIRLFNLKTGDTVYGQIRSPKEGERYFAL
LRVETVNFDEPAKSQRRIPFDNLTPLYPREKLNLETTTQEISTRIMNLFCPIGKGQRGLI
VAPPRTGKTIMLQKIANAITANHPEVYLIVLLIDERPEEVTDMERTVNAEVISSTFDEQA
TRHVQVAEMVLEKAKRLVEHKRDVVILLDSITRLARAYNQTMPTSGKVLSGGVDSNSLHK
PKRFFGAARNIEEGGSLTIIATALIETGSKMDEVIFEEFKGTGNMEVNLDRKLSDRRLFP
AINIKRSGTRKEELLLTEAEMQLMWILRKFISSMDDADIIEFLIDRMNKSKNNEAFLKSM
NAGLAQKD
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacaataagaaagagaaaagctttgccgcaagtttctgaggattccttgtttgatacg
gggagcaactctaatgaagatttggttattagtacatccgatgaacagactgatgaccta
tctgttaatacggcaaatgagattcaagctgctgtagaacaaacaagaattgagcaaaac
aaagaagcagacgatgaaattcttgaaaaaaaagttgttgtccgttcacgaggaagaaaa
agaacggtaaattcttctgatgaagttgaaaccaagcctgcaaaaaaaacaagcctgcct
gcaaaaaaacgcttacctagggatatacaagatgaaaaagatgaaattatccctgaacca
gatacttcttttaaaatcattataaatgatcttacaaagatgcgtatgcatgatttaaga
gatatggctgtaaaatacggtgtgcctgaagatgagctgtccttaatgaaaaaacaggat
gttatttatcatattctcaaaaatcataccaatcaaggcggtagtatttttgcttcaggc
tccttagagacacttcccgacgggtacggttttttacgctcgcctcaaaacagctattta
acgggaacggatgatgtttacgtttctcccagtcagataaggctttttaaccttaaaacg
ggagatactgtttacggtcaaatccgctcaccaaaagagggcgaaagatattttgccctt
ttaagagtagaaacggtcaactttgatgagcctgcaaaatcccagcgccgaattccgttt
gataaccttacgcctctttatcctagagaaaaattaaaccttgaaacaactactcaggaa
atatctactagaattatgaacttgttctgtcctataggaaagggacagcggggattgatt
gtagctcctcctcgtacgggaaaaacgataatgcttcaaaaaatagccaacgcaattact
gccaatcatcctgaagtttatctcatagttcttttgatagatgagcgccctgaagaagtt
accgacatggagcgtacggtaaatgcggaagttatttcttctacctttgatgaacaggca
acccgtcacgtccaagttgctgaaatggtacttgaaaaggcaaaacgccttgtagaacac
aaaagggatgttgttattctattagactcaattacacgtttagcaagggcttataaccag
actatgcctacttcgggtaaggtactatcaggcggtgtggattcaaactctctccataaa
cccaagcgttttttcggtgctgcaagaaatatcgaagaaggcggaagtttaacgataata
gctacagctcttattgaaaccggaagcaaaatggatgaggttatttttgaagaatttaaa
ggaaccggcaatatggaagtaaacctggacagaaaactttcagaccgccgcttattcccg
gcaatcaatataaagcgctcgggaactcgaaaagaagagcttttattaaccgaagctgaa
atgcagcttatgtggatattacgcaaattcatcagttcaatggatgatgccgatattatc
gaatttttaatcgatagaatgaataaaagtaagaataacgaagcttttttaaaatcaatg
aatgccggtcttgcacaaaaagactaa
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