Treponema paraluiscuniculi Cuniculi A: TPCCA_0111
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Entry
TPCCA_0111 CDS
T01555
Symbol
rpoN
Name
(GenBank) DNA-directed RNA polymerase sigma subunit RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tpl
Treponema paraluiscuniculi Cuniculi A
Pathway
tpl02020
Two-component system
tpl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tpl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TPCCA_0111 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TPCCA_0111 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpl03021
]
TPCCA_0111 (rpoN)
Transcription machinery [BR:
tpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TPCCA_0111 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_24
HTH_Tnp_ISL3
HTH_Crp_2
DUF1670
HTH_3
HTH_26
KdpC
Motif
Other DBs
NCBI-ProteinID:
AEH40067
UniProt:
F7XRV2
LinkDB
All DBs
Position
126855..128345
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AA seq
496 aa
AA seq
DB search
MSVSLLFCIPFVGLVCRARGDMQQLVQQQRLVLNQRLVHGLCLLQLSRGDLKTEVLRAVQ
RNPLLEIRPSSARHTGKACYLSLGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVF
YQKHEAIVLDLACAFIQMLDDHGFFSISPAIFQNMCGSMPTALQEKIPQAIALIQRLEPQ
GCAVFSFKESLAVQARLRFERFSDPLYRCVINLLTHHSELLFCSDNVCDGRVSVHALTTQ
INSMGLCVQKVSSNDVKDILLLIKELHPFPGKCVSNAQRADTNMLLEPDVLITKTAHGFV
TQINCTGIPTVVFRNDYCMHSKAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVH
YQCGFFDHGPAKLTPLRMTDVAHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRVLS
TEEYRDRSSLGQNYPSSPHSKVSVKHRISRLIQEARTQRISLSDRRIAQLLGEQGIKCAR
RTVNKYRSELRTCSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtttcgctccttttctgtattcctttcgtgggattggtttgcagggcacgtggt
gatatgcagcagcttgttcaacagcagcggttagttctcaatcagcggttggtgcacggg
ctttgtttactgcagctttctcggggggatttgaagaccgaggttctccgtgccgtgcaa
cgcaatccccttttagaaatacgtccttcgtccgctcgtcacactgggaaggcttgttac
ctgtcgctcggtgatagacgtgagcgcatgcgcgcacgtgatcgctttcagcaattgctg
gaaaatcagcccgataagcaggttgacaatatccgagctgtattgcgtgaacaagttttt
tatcaaaaacacgaagcgattgtgctcgatttggcgtgcgcgtttatccagatgttagat
gatcacggttttttttccatatctcctgcgatctttcagaacatgtgtggtagtatgccc
acggcccttcaagaaaaaataccgcaggcaatagcgctcattcaaagacttgagccacaa
gggtgtgctgtttttagttttaaagaatcattggcagtccaagcgcggctgcgctttgag
cgtttctctgatcccttgtatcgatgtgttatcaatctactaacacaccacagcgaattg
cttttctgctctgacaatgtgtgtgatggacgcgtatccgtgcacgcgctgacgacacag
attaatagtatggggctttgtgtgcagaaggtttcgtcaaatgacgtgaaagatattttg
ctcctcattaaggaactacatccctttccaggtaagtgtgtgtcgaacgctcagcgggct
gacacgaacatgttgcttgaaccagatgtattgattacaaaaactgcgcacgggtttgtt
acacagattaactgcacgggcatcccaactgtggttttccgaaacgattactgcatgcat
tcaaaagcagcagaaaaaaaccacgcgttgaaagcatgcatgcacgacgcgctcagtctt
gtaagtatgctctcataccgggaacgtaccttgctggatatcgcgaaaacaatagttcac
taccaatgcggtttctttgatcacggacctgcaaagctcacgcccctgagaatgacagat
gttgcacacaggaccggattgagcgtttcaacagtgtcccgcatagtgcgcgacaaatgg
ctccagtacggatcgcaacacttttccttaaggtactttttctcccctcgggttttatcc
accgaagaatatcgtgatcggtccagtcttggacagaattacccgagttctccgcactca
aaagtatcagttaagcaccggatatcacgtctcatacaagaggcacgaacgcagcgtata
tccctttccgaccgaaggatagcccagttgctcggtgagcagggcatcaagtgcgcaaga
cgtaccgtaaataagtaccgatcagaattacgcacttgttcttcttcttaa
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