Treponema paraluiscuniculi Cuniculi A: TPCCA_0254
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Entry
TPCCA_0254 CDS
T01555
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tpl
Treponema paraluiscuniculi Cuniculi A
Pathway
tpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPCCA_0254 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpl03021
]
TPCCA_0254 (rho)
03019 Messenger RNA biogenesis [BR:
tpl03019
]
TPCCA_0254 (rho)
Transcription machinery [BR:
tpl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TPCCA_0254 (rho)
Messenger RNA biogenesis [BR:
tpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TPCCA_0254 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
AAA_22
OB_RNB
AAA
AAA_16
AAA_25
Spore_III_AA
ResIII
AAA_14
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEH40205
UniProt:
F7XS82
LinkDB
All DBs
Position
264074..265633
Genome browser
AA seq
519 aa
AA seq
DB search
MKDSVGTVVGQGELGLEEGIVGNQIVSEDSAADVGECDAYGGRKKLVIRSRSRRRVVTSK
ALEVEKRPRRALRFKQNFCPEDAETSESSADIKGRARLLIDDLTEMGMHALRDFAVQRGI
SQEDVVVMKKSDIVFHILKNHTENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYV
SPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYP
REKLNLETRTEDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYL
IVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVILL
DSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIETG
SRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSIKKSGTRKEELLLTEEEMQRIWVLR
KVINPMDDAEIVELLIDKMRKTKNNEAFLRSMNTGAFSS
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattctgttggtaccgtcgtcggacaaggagagttgggtttggaagagggaatc
gtggggaatcagattgtgtctgaggatagtgccgctgacgtgggggaatgcgatgcctac
ggcgggaggaagaagctcgtcatccgctctcgctcacggagacgagtggtgacgtcaaaa
gcgctggaggtggaaaaacgtccgcgaagagccctacgctttaagcaaaatttctgccca
gaagatgcggaaacaagtgagtcttccgccgacattaagggtagggcgcgtttgctgatt
gatgatttaactgagatggggatgcatgccctgcgtgattttgcagtacagcggggtatc
tctcaagaagacgtggttgtcatgaaaaagtcagatatcgtctttcacattcttaaaaat
cacactgagaatggtggcgttatctttgcttctggctcgctggagatattgcctgacggt
tatggttttttgcgttcacctcagaacagttatttgcccggttccgatgacatctacgtc
tctccaagtcagattcgcctgtttaatctgaaaacgggcgacaccatctatgggcagatt
cgctcccctaaggagggagagcgtttctttgcaatgctccgcgtggaaacggtaaacttc
gaagaagtagcaaaggtacaggaccgtgtccctttcgacagtcttacccctttgtacccg
cgggaaaagctgaatttagaaacaaggacggaagatatctcaacgcgtgtcatgaacttg
ttctgtccgatcggaaaggggcagcgtgcgctgattgtagcgccgccacgtacgggaaag
acgattctcatgcagaaaattgcaaatgccatcacgcaaaatcatcctgaagtttatctt
atcgtgctgctcatcgatgagcgtcctgaagaggtaaccgacatggagcgtacggttgat
gctgaagttatttcttctacgttcgatgaacaggctactcgccatgtacagattgcagag
atagtgcttgagcgcgcaaagcgattggtagagcaccggaaggacgtggtgattttgctt
gactcgattacgcgtctggcgcgtgcctataaccaaacgatgccaacttcaggtaaagtg
ttgtcggggggagtggattcaaatgctctgcacaaaccgaaacgcttctttggtgcagct
cgcaatgtggaggaaggaggaagtctgacaatcattgccactgcgcttattgaaacaggc
agtaggatggatgaggttatttttgaggagtttaaaggtacggggaatatggagataaat
ctcgatcgtcgcctttcggatcggcgcctatttcccgcggtgagtattaaaaagtctggt
acgcgtaaggaagagttgctcctgacggaggaagaaatgcagcgtatttgggtgttgcgt
aaggtaatcaatcctatggacgatgcagaaattgtggaattgttaattgataagatgcgt
aaaacaaagaacaacgaggcgtttttgaggtctatgaatacgggtgcgttctcctcctga
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