Tautonia plasticadhaerens: ElP_01090
Help
Entry
ElP_01090 CDS
T09913
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tpla
Tautonia plasticadhaerens
Pathway
tpla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ElP_01090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpla03021
]
ElP_01090 (rpoC)
03400 DNA repair and recombination proteins [BR:
tpla03400
]
ElP_01090 (rpoC)
Enzymes [BR:
tpla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ElP_01090 (rpoC)
Transcription machinery [BR:
tpla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ElP_01090 (rpoC)
DNA repair and recombination proteins [BR:
tpla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ElP_01090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
QDV32281
UniProt:
A0A518GUM5
LinkDB
All DBs
Position
112843..117129
Genome browser
AA seq
1428 aa
AA seq
DB search
MSMGESAYDRINDYGAVKIGLASPYDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSR
LGTLLDMRTTSLERIIYFQDYVVVDPGDTPLKERQLLTEEEFRKYRADYGDTFEAEMGAE
AVRKLLLRLDLVELSKILRQELVETNSRQKIKDLTKRLKVVESLRDSDNRPEWMVLEAIP
VIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQAV
DALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKL
HQCGLPKKIALELFQPFIIRRLKELGHADTIKSAKKMLERRTEEVWDILEEVIQNHPVLL
NRAPTLHRMGIQAFEPVLVEGNAIRIHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAMTL
MMSTNNIFSPANGSPIISPSQDIVMGCYYLTVHRPGEPGEYRKEDGGREFGVYAAPTEVF
QAFSQRKVGKHAMIRMRLPAHKSLRGDGEKEFTPGMVISTTVGRVIFNDMLPPKMPYYNT
ALGQKQLQGIIADCYQMLGRRETIGLLDNMKEIGFRESTRSGLSFATDDLKTPLNKQKIL
DDAEKEVVKNNKLYQRGIITELERYNKVLDAWTHARELITQQMMADLKSDERDGEVYLNP
IYLMADSGARGGVEQIRQLAGMRGLMAKPSGKIIETPIKANFREGLSVLEYFSSTHGARK
GLADTALKTADSGYLTRKLADVAQNVVITMRDCGTTQGITKGTVYKGSSEKVEVAISQMV
RGRVSRVNIVNPITDEIVVRESEMITVAGAKKLEEMQVEKIQVRSPLTCEAPLGVCQLCY
GMDLATGQLVEQGMAVGIIAAQSIGEPGTQLTMRTFHIGGTATTGIEEKELRAKRDGVVK
LVGINVVVNDEGQKIALSRNGEIQLLDAKGRELEKYDVPDGSVMMVEDGQEAARGTILCE
WDPHNIPILAEVGGKVRFEDIIEGETLRIEQDPRTGHNRSAIMEHKGDLHPQIILEDGEG
KILDFYYIPERAGIEVQEGQQIKAGSVLAKTPREARRTMDITGGLPRITELFEARRPKEP
AVIAEVDGKVEILEEKRRGKRVIIVRNESGVEREHQVPHGKYMKVHTGSRVRAGEPLVEG
PLVPHDILRISGEEAVQRYLLREIQNVYRAQRVEIDDKHLEITVSQMLRKVKIESVGDTN
LLPGSVIDKFEFRRTNQEMLGCVKVKDPGDTDFRTGDIVPRDTFEAENGRVEENGGSKAE
WVRPKPAAASTQLLGITKAAVQSESFISAASFQETTKVLTEAALAGKVDYLVGLKENVIL
GHLVPAGTGFKLHQEAEVRIRPEALEALAEKGPSYARYRDEAPAAPAE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatgggcgagagtgcctacgatcgtatcaacgattacggtgccgtcaagatcggg
ctcgcctccccgtacgacatccgcagctggtcgttcggcgaggtgaagaagcccgagacg
atcaactatcggacctaccgccccgagaaggacgggctcttctgcgagcgcatcttcggc
cccgagaaggactgggagtgcgcctgcggcaagtaccggggcatgaagtacaaggggatg
atctgcgaccgctgcggcgtcaaggtcacccactcccgggtccgccgcaagcggatgggc
cacatcgagctggccgcgccggtggtccacatctggttcttcaaggccatgcccagccgc
ctgggcaccctgctggacatgcggacgaccagcctggagcggatcatctacttccaggac
tacgtcgtcgtcgaccccggcgacacccccctcaaggagcggcagctgctcaccgaggag
gagttccggaagtaccgcgccgactacggcgacaccttcgaggccgagatgggggccgag
gccgtccgcaagctgctgctgcggctggacctcgtcgagctctccaagatcctccgccag
gagctggtcgagaccaacagccggcagaagatcaaggacctgaccaagcggctcaaggtg
gtcgagagcctgagggactccgacaaccggcccgagtggatggtcctggaggcgatcccg
gtcatcccgccggacctccgcccgctggtgctgctggatagcggcaacttcgccaccagc
gacctgaacgacctgtaccgccggatcatcaaccgcaacaaccggctcaagaagctggtg
gacctgaacgcccccgaggtgatcatccgcaacgagaagcggatgctccagcaggccgtc
gacgcgctgttcgacaacaaccggtgcaagcggccggtgctggggtcgagcaaccgcccg
ctcaagtcgctcaccgacatgatcaagggcaagcagggccgcttccgggagaacctgctg
ggcaagcgcgtcgattactcggcgcggtcggtgatcgtggtcggcccggagctgaagctg
caccagtgcggcctgccgaagaagatcgcgctggagctgttccagccgttcatcatccgg
aggctcaaggagctgggccacgccgacacgatcaagtcggccaagaagatgctggagcgg
cgcacggaggaggtctgggacatcctcgaggaggtgatccagaaccacccggtgctgctg
aaccgggcgccgacgctgcaccggatgggcatccaggcgttcgagccggtgctcgtcgag
ggcaacgccatccgcatccacccgctggtctgccgcggcttcaacgccgacttcgacggc
gaccagatggcggtgcacctgccgctgtcgatcgaggcgcaggtcgaggcgatgacgctg
atgatgtcgaccaacaacatcttcagccccgccaacggcagcccgatcatcagcccgtcg
caggacatcgtcatgggctgctactacctgacggtgcaccgccccggcgagccgggcgag
taccgcaaggaggacggcggccgggagttcggcgtctacgccgcgccgaccgaggtcttc
caggccttcagccagcggaaggtcggcaagcacgcgatgatccggatgcggctgccggcg
cacaagtccctgcggggcgacggcgagaaggagttcacccccggcatggtgatcagcacc
accgtcggccgggtgatcttcaacgacatgctgccgccgaagatgccctactacaacacc
gcgctgggccagaagcagctgcaggggatcatcgccgactgctaccagatgctcggccgc
cgggagacgatcgggctgctggacaacatgaaggagatcggcttccgggagtcgacccgc
tcgggcctctccttcgcgaccgacgacctgaagacgccgctgaacaagcagaagatcctc
gacgacgccgagaaggaggtcgtcaagaacaacaagctctaccagcgcgggatcatcacc
gaactggagcggtacaacaaggtgctcgacgcctggacgcacgcccgggagctgatcacc
cagcagatgatggccgacctcaagagcgacgagcgcgacggcgaggtgtacctcaacccg
atctacctgatggccgactccggcgcccggggcggcgtcgagcagatccgccagctcgcc
ggcatgcgaggcctgatggccaagccctcgggcaagatcatcgagacgccgatcaaggcc
aacttccgcgaggggttgagcgtcctcgaatacttctcctccacccacggcgcccggaag
ggcctggccgacacggccttgaagacggccgactcgggctacctgacccggaagctggcc
gacgtggcgcagaacgtcgtcatcacgatgagggactgcggcaccacccagggcatcacc
aaggggaccgtctacaaggggtcctcggagaaggtcgaggtggccatcagccagatggtc
cggggccgggtgagccgggtgaacatcgtcaaccccatcaccgacgagatcgtcgtccgc
gagagcgagatgatcaccgtcgccggggccaagaagctcgaggagatgcaggtcgagaag
atccaggtccgcagcccgctgacgtgcgaggcgccgctgggcgtctgccagctctgctac
ggcatggacctggccaccggccagctcgtcgagcaggggatggccgtcggcatcatcgcc
gcgcagtcgatcggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggc
accgccaccaccggcatcgaggagaaggagctgcgggccaagcgggacggcgtcgtcaag
ctcgtcggcatcaacgtcgtcgtcaacgacgaggggcagaagatcgccctgtcccgcaac
ggcgagatccagctgctcgacgccaagggccgggagctggagaagtacgacgtgccggac
ggctcggtcatgatggtcgaggacggccaggaggccgcccggggcacgatcctctgcgag
tgggacccgcacaacatcccgatcctcgccgaggtgggcggcaaggtccgcttcgaggac
atcatcgagggcgagacgctccgcatcgagcaggacccgcgcaccggccacaaccgctcc
gccatcatggagcacaagggggacctgcacccgcagatcatcctcgaggacggcgagggg
aagatcctcgacttctactacatccccgagcgggccggcatcgaggtccaggagggccag
cagatcaaggccggctccgtgctggccaagacgccccgggaggcccgccggacgatggac
atcaccggcggcctgccccggatcaccgagctgttcgaggcccgacgcccgaaggagccg
gccgtcatcgccgaggtcgacggcaaggtcgagatcctcgaggagaagcggcgcggcaag
cgcgtgatcatcgtccgcaacgaatcgggcgtcgagcgcgagcaccaggtgccgcacggc
aagtacatgaaggtgcacaccggcagccgggtccgcgccggcgagcccttggtcgagggg
ccgctcgtgccgcacgacatcctccggatctccggcgaggaggccgtgcagcgctacctg
ctccgggagatccagaacgtctaccgggcccagcgggtggagatcgacgacaagcacctg
gagatcaccgtctcccagatgctccgcaaggtgaagatcgagtcggtcggcgacacgaac
ctgctgcccggctcggtgatcgacaagttcgagttccgccggaccaatcaggagatgctc
ggctgcgtcaaggtcaaggaccccggcgacaccgacttccggaccggcgacatcgtcccc
cgggacaccttcgaggccgagaacggccgggtcgaggagaacggcggcagcaaggccgag
tgggtccgccccaagccggccgccgccagcacgcagctgctgggcatcaccaaggccgcg
gtgcagtccgagagcttcatctcggccgccagcttccaggagacgaccaaggtgctcacc
gaggccgccctggcgggcaaggtggactacctcgtcggcctgaaggagaacgtgatcctc
ggccacctcgtccccgccggcaccggcttcaagctccaccaggaggccgaggtccgcatc
cgccccgaggccctcgaggccctcgccgagaagggccccagctacgcccggtaccgggac
gaggccccggccgccccggccgagtga
DBGET
integrated database retrieval system
