Tautonia plasticadhaerens: ElP_08180
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Entry
ElP_08180 CDS
T09913
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpla
Tautonia plasticadhaerens
Pathway
tpla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ElP_08180 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpla03400
]
ElP_08180 (mfd_1)
Enzymes [BR:
tpla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ElP_08180 (mfd_1)
DNA repair and recombination proteins [BR:
tpla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ElP_08180 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
Stm1_N
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QDV32976
UniProt:
A0A518GWJ8
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All DBs
Position
1065881..1069282
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AA seq
1133 aa
AA seq
DB search
MPDVPARSTAAEPRGLTDLTRLIQRSDGFSEVLAALKNGRGATIDGAWGSAAPLASAALS
WHASGSLLVVIPHVGDVDDFAGDLAAFAGVPVETLPAWDRPPGESKPGDEILARRLRVAR
RFLDDPPRIVAASMQALMQPVPTPAALGRASRVVTVGEAVAVEGLIAWLGGRGMARVEVV
EVAGEFSLRGGILDVFPPDRPEPVRIEFFGDDVESIRPFDPESQRSLGALESVSLTTPSA
IADHAPDALGHLADYLPGGSWVALVEPEDLKEQGGHYLARVERRRGLFTVEGTFRRLTER
PSIALSAVASASLETTCRLRVESVERFSGELSKVKAELDSASAGHRVLIACHNAAEIERL
GEVFAGTDLVREGRLELTTGRVRSGFHLIDAGLLVIGDHELFDRTEVRRSTGRRRYETRA
IDSFLDLNEGDLVVHINHGIARYRGLQLVDKEKGLGYAEEQLVLEFAEGTKLYIPVAKID
LVQKYVGGGKADPPLSKIGSSSWEKRKKRVAEAVVDLAQDLIDLQAQRASKPGIAFPEGD
SHWLTEFEAAFPYQETPDQLSAIESIKRDMAQPRPMDRLICGDVGYGKTEVAMRAAFKAA
DAGKQVAVLVPTTVLAEQHHRTFTRRMAEFPFRIEVVNRFRPRGEIRQVLKDAAAGTVDI
LIGTHRLVQKDVAFKDLGLIVIDEEQRFGVEDKEWLKSLRATVDILTLSATPIPRTLHMA
LLGIRDISNLETPPPDRKAIETRITRWDDRMIRQAIQRELNRDGQIYFVHNKVFDIQSVA
DRIQALVPEARILVGHGQMTGEQLEKAMMSFVRHEADILVATTIIESGLDIPNANTIFIH
EADRYGLADLHQLRGRVGRFKHRAYAYMILEESKAVTPNAVRRLKAIEEFTDLGAGFKIA
LRDLEIRGAGNILGAEQSGHIEAVGYELYCSLLEGAVRSLTGKGERPRYDCSIELSWRAY
LPADYVPSHKLKVELYRRAGRLRSPERLADFRRELADRFGPLPPPADHLLAEAELRILAE
HWMVPRLHVEDEFLVLTYRNARRIEALARLHPAGAVRVVDDKTAYVPLDEDRSPDAIARL
ARGLLSPPKPSPAPAEGEAKPDPPAKAPAPGPTPDRAVPVSRGLAGRSGRRRP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgtccccgcccgatcgaccgccgccgagccccgaggcctgacggacctgacc
cggctgatccagcgctccgacgggttctccgaggtgctcgccgccctgaagaacggcagg
ggggcgaccatcgacggcgcctgggggtcggccgcgccgctggcttccgccgcgctgtcc
tggcacgcgtcgggctcgctgctggtggtcatcccccacgtcggggacgtggacgacttc
gccggcgacctggccgccttcgccggcgtcccggtcgagaccctccccgcctgggatcgc
cccccgggcgagtcgaagcccggcgacgagatcctcgcccggcggctccgggtcgcccgc
cggttcctcgacgacccgccccggatcgtcgccgcctcgatgcaggcgctgatgcagccg
gtcccaaccccggccgcgttggggcgggcctcccgggtggtgaccgtcggcgaggcggtg
gcggtggaggggctgatcgcctggctcggcggccggggcatggcccgggtcgaggtggtg
gaggtggccggcgagttcagcctcaggggcggcatcctcgacgtgttcccgcccgaccgg
ccggaaccggtccggatcgagttcttcggggacgacgtggagtcgatccggccgttcgac
cccgagtcgcagcgttcgctcggggccctggagtcggtctccctgaccaccccctcggcg
atcgccgaccacgcgccggacgccctcggccacctggccgactacctgcccggggggagc
tgggtggcgctggtcgagccggaggacctgaaggagcagggggggcactacctggcccgg
gtcgagcgccgacggggcctgttcaccgtcgaggggacgttccggcgcctgaccgagcgg
ccctcgatcgcgctgtcggccgtcgcctcggccagcctggagacgacctgccggctgcgg
gtggagagcgtcgagcggttcagcggcgagctgtcgaaggtgaaggccgagctggattcc
gcctcggccgggcaccgggtcctgatcgcctgccacaacgccgccgagatcgagcggctg
ggcgaagtcttcgccggcaccgacctcgtccgcgaggggaggctggagttgacgaccggc
cgggtgcgatccggcttccacctgatcgacgccggcctgctcgtgatcggcgaccacgag
ctgttcgaccgcaccgaggtccgacgctccacgggccgccgccgctacgagacccgggcg
atcgacagcttccttgacctcaacgagggggacctcgtcgtccacatcaaccacgggatc
gcccgatatcgcgggctgcagctggtcgacaaggagaaggggctcggctacgccgaggag
cagctcgtcctcgaattcgccgaggggacgaagctgtatatcccggtcgccaagatcgat
ctggtccagaagtacgtcggcggcggcaaggcggacccgccgctctcgaagatcggctcg
tcctcgtgggagaagcggaagaagcgggtcgccgaggcggtggtcgacctggcgcaggac
ctgatcgacctgcaggcccagcgcgccagcaagcccggcatcgccttccccgagggcgac
tcgcactggctcaccgagttcgaggccgccttcccctaccaggagacgcccgaccagctc
tcggcgatcgagtcgatcaagcgggacatggcccagccccggccgatggaccgcctgatc
tgcggggacgtcggctacggcaagaccgaggtcgccatgcgggccgccttcaaggccgcc
gacgccggcaagcaggtggccgtcctggtgccgaccacggtgctcgccgagcagcaccac
cgcaccttcacccggcggatggccgagttcccgttccggatcgaggtcgtcaaccgcttc
cgcccccggggggagatcaggcaggtcctcaaggacgccgccgccggcacggtcgacatc
ctgatcggcacccaccggctcgtgcagaaggacgtggccttcaaggacctggggctgatc
gtcatcgacgaggagcagcgcttcggggtcgaggacaaggagtggctcaagtcgctccgg
gccacggtggacatcctcaccctctcggccacgccgatcccccggaccctgcacatggcg
ctgctcggcatccgggacatctccaacctggagacgcccccgccggatcgcaaggcgatc
gagacccggatcacccgatgggacgaccggatgatacgccaggcgatccagcgggagctg
aatcgcgacggccagatctacttcgtccacaacaaggtgttcgacatccagtcggtcgcc
gaccgcatccaggcgctggtgcccgaggcgaggatcctcgtcggccacggccagatgacc
ggggagcagctggagaaggcgatgatgagcttcgtccgccacgaggccgacatcctcgtg
gcgacgacgatcatcgagagcggcctggacatccccaacgccaacaccatcttcatccac
gaggccgaccgctacggcctggccgacctgcaccagctccggggccgggtcgggcgcttc
aagcaccgggcctatgcgtacatgatcctggaggagagcaaggcggtcaccccgaacgcc
gtgcggcggctcaaggcgatcgaggagttcaccgacctgggcgccgggttcaagatcgcc
ctgcgggacctggagatccggggggccgggaacatcctgggggcggagcagtcggggcac
atcgaggcggtcggctatgagctgtactgctcgctcctggagggggcggtgcgctccctg
accggcaagggggaacgccctcggtacgactgctcgatcgagctgtcctggagggcctac
ctgccggccgactacgtcccgtcccacaagctgaaggtggagctctaccgccgggccggc
cggctccggagcccggaacggctggcagacttccgccgggagctggccgaccgcttcggc
ccgctgccgccccccgccgatcacctgctggccgaggccgagctccggatcctggccgag
cactggatggtgccccggctgcacgtcgaggacgagttcctcgtgctgacctaccgcaac
gcccgtcgcatcgaggccctggcccggctgcaccccgccggggccgtccgggtcgtcgac
gacaagacggcgtacgtcccgctcgacgaggaccggtcccccgacgccatcgcccgactc
gcccggggcctgctcagccccccgaaaccctcccccgccccggccgagggcgaggcgaag
cccgatcccccggcgaaggcccccgcgcccgggccgactcccgaccgggccgtgccggtg
agccgcgggctcgcgggacggtccgggcgccgccggccctga
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