Tautonia plasticadhaerens: ElP_10790
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Entry
ElP_10790 CDS
T09913
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpla
Tautonia plasticadhaerens
Brite
KEGG Orthology (KO) [BR:
tpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpla03016
]
ElP_10790 (rtcB)
Enzymes [BR:
tpla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ElP_10790 (rtcB)
Transfer RNA biogenesis [BR:
tpla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ElP_10790 (rtcB)
Prokaryotic type
tRNA splicing ligases
ElP_10790 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV33237
UniProt:
A0A518GXC1
LinkDB
All DBs
Position
complement(1391214..1392677)
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AA seq
487 aa
AA seq
DB search
MPGAYTGPLEKVGPCQWKIPRSYREDMRVDGLIFADDTLIEQIRRDQGPEQVANVATLPG
IQRASLAMPDIHWGYGFAIGGVAATDPEQGGVISPGGVGYDINCGVRLLRSDLSWDDARP
HIKRLVDQLYRDIPTGVGQSGRYSFRPDELSELMSKGSSYVVDRGWGAPRDLEFTEAGGR
LDDARPDLVSPRAFARGADQCGTLGSGNHFLEVQVVDRVIDDQAAGVMGLREGMVTLLIH
SGSRGLGYQVCDDHLAMFRDAPQKYGFTLPDRQLACAPVLSPEGQSYLGAMRAAANYAWC
NRQLLTHQARLVFERIFGESWAALGLDLVYDVAHNIAKFEDHDVGDDLRKSLCVHRKGAT
RAFPPGHPEIPRKYHEIGQPVIIPGSMGTASWVLAGQAGSMAQSFGSSCHGAGRMMSRTA
AIKLADGRRIDKELDAMGIIARARGHKGLAEEQPAAYKDVDQVVEVVDSVGISKKVARLR
PVGVIKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcccggagcctacaccggcccgctcgagaaggtcgggccctgccagtggaagatcccc
aggagctatcgggaggacatgcgggtcgacggattgatcttcgccgacgacacgctgatc
gagcaaatccgcagggaccaggggcccgagcaggtcgccaacgtggcgacccttcccggg
atccagcgcgccagcctggcgatgccggacatccactggggttacggcttcgccatcggc
ggcgtggccgcgaccgaccccgagcaggggggggtcatctccccgggcggggtcggctac
gacatcaactgtggggtccgcctgctccgctcggatctctcctgggacgacgcgaggccg
cacatcaagcgactggtcgaccagctgtaccgggacatcccgaccggagtcggtcagtcc
ggccgttactcgttccggcccgacgagctgtccgaactgatgtcgaaagggtcgagttac
gtcgtcgatcgcgggtggggggctcctcgggacctcgaattcaccgaggccggaggccga
ctcgacgatgccaggcccgacctcgtgagtccccgagccttcgcccggggggccgaccag
tgcggaacgctcggctccgggaaccacttcctagaggtccaggtcgtcgaccgtgtgatc
gacgatcaggcggcgggagtcatgggcctgcgtgaggggatggtcaccctcttgatccac
tccggatcccgaggcctcggttatcaggtctgcgacgaccacctggcgatgttccgcgac
gcccctcagaagtacgggttcaccctccccgaccggcaactcgcctgcgccccggtcctg
agtcccgaggggcaatcgtacctcggggcgatgcgagcggcggcgaattacgcgtggtgc
aaccggcaattgctcacccatcaagcccgcctcgtcttcgagcggatcttcggagagtcg
tgggcggccctggggctggatctcgtctacgatgtggcccacaacatcgccaagttcgag
gaccacgacgtgggggacgacctgcgcaagtcactctgtgtccaccgaaagggggcgacc
cgtgccttcccgccggggcacccggagatcccccggaagtaccatgagatcggccagcct
gtgatcatccccggcagcatgggtacggcgagttgggtcctcgcaggccaggcggggagc
atggcccagtcgttcggttcgagttgccacggcgccgggaggatgatgagtcggacggcc
gccatcaagctcgccgatggacggaggatcgacaaggaactcgacgcgatgggcatcatc
gcccgggcccggggccacaaggggctcgcggaggagcaaccggctgcctacaaggacgtc
gatcaggtcgtcgaggtcgttgactcggtcgggatttccaagaaggtcgcccgcctgcgg
ccggtcggcgtcatcaagggctga
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