Tenacibaculum platacis: T19A05C_0057
Help
Entry
T19A05C_0057 CDS
T11461
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tplt Tenacibaculum platacis
Pathway
tplt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tplt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T19A05C_0057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tplt03019
]
T19A05C_0057
03009 Ribosome biogenesis [BR:
tplt03009
]
T19A05C_0057
Enzymes [BR:
tplt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T19A05C_0057
Messenger RNA biogenesis [BR:
tplt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T19A05C_0057
Ribosome biogenesis [BR:
tplt03009
]
Prokaryotic type
rRNA helicases
T19A05C_0057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
CAL2075046
LinkDB
All DBs
Position
T190524A05C:complement(55216..57024)
Genome browser
AA seq
602 aa
AA seq
DB search
MSKFADLGLKEPINKALVDLGYETPTVIQEKAIPQILSSNEDLKAFAQTGTGKTAAFSLP
IVELADDQDNTTQAIILSPTRELAVQIGKNIEDFSKYLPKLKVVTVYGGANIEQQIRQLK
KGAQIVVGTPGRTVDLIRRRALKLGNVKWLVLDEADEMLNMGFKEELDKVLEATPETKQT
LLFSATFPREVEAIARNYMHNPVEVTSGQKNQGSDNVTHQYYLVNEKTRYPALKRVADIN
PNIYAIVFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDSVMEKFRKKNIQMLVATD
VAARGLDVDNLTHVINHKLPDQIENYNHRSGRTGRAGNKGISVALVNRKERNKLNPIERI
LKKKFEETTIPTGKEICEKQLFHLIDKVEKSEVNTSEIDSFLPNIYDRLKDFSREELIQK
FVSLEFNSFLSYYENAPDLNKMSSDRDRDRGDRRSRNGRMSSEDMTRFFINLGRKDRLNP
AKLMGLINEQGINSNVEIGAIDILDTFSFFEIDKNFESQTLDAFSDNSPEFNGRRVNIEI
TKTERKGGGRRRGGRRRNDDNDNKPSRGFGRTRNSGKKPFPKKDNNGNNGNKNRNSRRSR
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaattcgcagatttaggtttaaaagaacctattaataaagcgttggtagattta
ggttatgaaactccaacggttattcaagaaaaagctattccacaaattttatcatcaaat
gaagatttaaaagcttttgcacaaactggaacaggtaaaactgctgctttcagtttacca
atagtggaattagcagatgatcaagataatactacacaagcaattatactttctccaaca
agagaattagctgttcaaattggaaaaaatattgaagatttttctaaatacttaccaaaa
cttaaagtagttactgtttatggtggagctaatattgaacaacaaattagacaattaaaa
aaaggagctcaaattgtcgttggtacgcctggtagaacagttgacttaattcgaagaaga
gctttaaaactggggaatgttaagtggttagttttagatgaagctgatgaaatgcttaac
atgggattcaaagaagaactcgataaagtattagaagcaactccggaaaccaagcaaact
ttactattctcggctactttcccgagagaagttgaagccatcgcgagaaattatatgcac
aatccagtagaagttacttctggacaaaaaaaccaaggttctgataatgttactcatcaa
tactatttagttaatgaaaaaacacgttatccagccttaaaaagggttgctgatatcaat
cctaatatttatgccatagttttctgtagaacgcgtagagaaacgcaagaaatcgcagat
aaactaattcaagatggttataatgcagattcgttacatggggatttatctcaagcacaa
cgtgatagcgtaatggagaaatttcgcaagaaaaatatccaaatgttagttgcaactgat
gttgccgcgcgtggtttagatgtagataacttaactcacgttatcaatcataaattacca
gatcagattgaaaattacaaccacagaagtggacgtacaggaagagctggaaacaaaggt
atttctgttgcattagtaaacagaaaagaaagaaataagctgaaccctattgagagaatt
ttaaagaaaaaattcgaagaaactactattcctacaggaaaagaaatttgtgagaaacag
ttattccatctaattgataaagttgagaagtctgaagtaaatacttctgaaattgacagt
tttttaccgaatatttatgatcgattaaaagatttttctcgtgaggaattgattcaaaaa
tttgtttcgcttgaattcaactctttcttgtcttactacgaaaacgcacctgatttaaat
aaaatgtcaagtgatagagatagagatcgtggtgatagaagaagtagaaacggaagaatg
tctagtgaagacatgactagattctttatcaatttaggtagaaaagatcgtctaaatcct
gcaaaattaatgggattgattaatgaacaaggaattaacagtaatgttgaaattggtgct
atcgatatattagatacattctcattctttgaaattgataaaaactttgaatctcagaca
ttagatgcgttctcagataattctcctgaatttaacggcagaagagttaatattgagatt
acaaagaccgaaagaaaaggtggcggaagaagaagaggtggaagaagaaggaatgatgat
aacgacaacaaaccttcaagaggttttggaagaactagaaatagtggtaaaaaaccattt
ccaaagaaggataataatggtaataacggcaacaaaaacagaaattctaggaggtcaaga
agaagataa
DBGET
integrated database retrieval system
