Tenacibaculum platacis: T19A05C_1571
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Entry
T19A05C_1571 CDS
T11461
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tplt Tenacibaculum platacis
Pathway
tplt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tplt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
T19A05C_1571 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tplt03021
]
T19A05C_1571 (rpoD)
Transcription machinery [BR:
tplt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T19A05C_1571 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
DUF7443
T3SS_ATPase_C
Motif
Other DBs
NCBI-ProteinID:
CAL2083765
LinkDB
All DBs
Position
T190524A05C:1813080..1813943
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AA seq
287 aa
AA seq
DB search
MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQRALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKMYAFLEQENERPPSAEEIAKKLDMTVSDVKESMKNSGRHV
SMDAPLIEGEDSNLYDVLNSGESPNPDKTLLHESLRIEINRALETLTPREADVVRLYFGL
GEHQPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILMTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacaacttaaaattacgaaacaggtaaccaacagagaaactgcctcacttgataaa
tatttacaggagattggaaaagtagacttaattactgctgatgaagaagtagagttagcg
cagcgaataaaagcgggtgaccaaagagctttagaaaaattaactaaagcaaacttacgt
ttcgtagtatcggttgctaaacaatatcaaaaccaaggattaacattaccggatttaatt
aacgaaggtaaccttggattaattaaagctgctaaacgtttcgatgaaactcgtggtttt
aaattcatttcttatgctgtatggtggattcgtcaatcgattttacaagctttagcagag
caatcacgtatcgttcgtttacctcttaataaaattggatctattaataagatcaacaag
atgtatgctttcttagagcaagaaaacgaaagacctccaagtgctgaagagattgctaag
aaattagacatgacagtgagcgacgtaaaagaatctatgaaaaattcaggacgtcacgta
tctatggacgctcctttaatagaaggagaagattctaacttatatgatgtattaaattca
ggagaatctccaaatccagataaaactttattacacgaatctttgagaatcgaaattaat
agagctcttgaaacgttaactcctcgtgaagctgatgttgtaagattatactttggatta
ggggaacaccaaccaatgactttagaagaaattggagaaactttcgacttaacaagagaa
agagttcgtcagattaaagaaaaggcaattcgtagattaaaacacacatctagaagtaag
attttaatgacttacttaggatag
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