Treponema pallidum subsp. pertenue SamoaD: TPESAMD_0344
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Entry
TPESAMD_0344 CDS
T01751
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpm
Treponema pallidum subsp. pertenue SamoaD
Pathway
tpm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPESAMD_0344 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpm03400
]
TPESAMD_0344 (trcF)
Enzymes [BR:
tpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPESAMD_0344 (trcF)
DNA repair and recombination proteins [BR:
tpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TPESAMD_0344 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AEZ57459
LinkDB
All DBs
Position
complement(367812..371234)
Genome browser
AA seq
1140 aa
AA seq
DB search
MRGILHSWNELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDV
AAVCTDLAHAAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAPCAFVLTL
RALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFSLRGEILD
IAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILWSEERIAF
LHQNLQKLSECPAHCVPCIEELTHRKTYEGEEMFYPLCFERPTCVLEYFRHSPSPPSVFY
LDYERQHNGARALQDECRNLYHKMQLAHEHVPARWYPQPEHIVLDFSAVCALHLHTVYFT
HFFPQLPACESICLASDPARSFFGNIPYFKEELLRLSKDGWHVFVFAESEQQALRIRALV
KGCDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRARSTPIDTFVELNPGD
YVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEETILIPIEQAHLVQRYIGNEGNKPH
LDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYAFEAAFPYEE
TDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTPTTLL
VEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKDVSFK
DLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLTTPPE
GRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSICVA
HSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYGVSQLYQLRG
RVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDMEIRGVGNLLGK
EQSGDIYSVGFDLYVQLLEEAIERLQHAPNEQRIETVIDLNYRGFIPHMYIAADEIKMEL
YKKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAEIKVRCEKLAILSLKETHESLL
IEFDKVCDTAFKKILRLVQTSNDRVRLDAKQPNMLILTSDAIEIKEKGIFICEILKRLES
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtggcatactccattcttggaatgagctccagcatgcgctgcgctcgctgcgtgcc
gcacgctttccctaccgcgttgaagggtgcaccggtggactgcggtcctacttttttggc
gaatacgtgcgcacgtgttgcgcacacatagtgctcgtagtccctaccgaacaggacgtc
gccgccgtctgcaccgaccttgcacatgcagcagttcctacgcgcgtgctgccctggtgg
gggtcgctgccctaccgccctgtctcacctaacgcacacgtgttctctcaccgggtagag
gcgctgtgcgcactcgcacagcgcgatgcaaccgcgccatgcgcgttcgttctcaccctg
cgtgcactgctcacccccgttcctcccctcgattatgtgcgtaccctcaaacgctccttc
cgtgtgggagagcacatcgagatccacacgctcgctgcccagcttatgcaatggggatat
gcacgtgtcgaccacgtcagcgcttgcgcagagttttctctccggggagaaattctcgat
atcgctgccgcagcgcaggctgctgacaacacacaagcgtaccgaatcgtgtgtgatttt
aacaccatagaacgtatccatatactggcggtgtccacgtgtgccgtcctgcaagaggta
tctgcgtgcacactgtacgctgcaaaagaaattctttggagtgaggagcgtatagcgttc
ctccaccaaaatctccaaaaactgtccgaatgtcctgcccactgcgtcccgtgtatcgaa
gaactcacccacagaaaaacgtatgaaggggaggaaatgttctatccactgtgctttgaa
cgtcccacctgcgttctcgaatattttcgccacagcccttcacccccaagcgtcttttat
cttgactacgaacgccagcacaacggtgcacgcgcgctccaagacgagtgtcggaacctc
taccataaaatgcaactcgcgcacgaacacgtacctgcgcgctggtatcctcaaccagaa
cacatagtgctcgatttttccgctgtctgcgcgctccacctgcacacggtgtatttcact
cacttttttccacagctgccagcgtgcgaaagtatatgcttggcaagcgatcctgcacgc
agcttcttcggtaacattccttacttcaaagaagagctactccgtctttcaaaagacgga
tggcacgttttcgtctttgcagaaagtgagcagcaggcactgcgcatcagagcactagtc
aaaggttgcgacgtcactgtgctaccttgcgcgctttctgcaggatttagcattcctgct
ctcaaaatactgatcgttcaagaaggcgaaatcttcggtcgccgcagaaaaactcctcaa
tcagtgcaacgcgcacggagcacgcctatcgacacatttgtggaattaaatcccggggat
tacgtggtgcatgcgcagtacggcatcggtttatttaagggaatagagcgcataaaaaca
gcacagtcagaacgtgattacgtaaacctcctctatgcacaggaagaaacgatccttatc
cctattgagcaggcacatctggtgcaacgttacattggaaatgaagggaacaaacctcac
ttagatagccttgggtcaaagtcatgggaaacgagaaaagcacgtgtcaaaaaatctgtt
gaaaacatcgcgcaaaaactagtggaactctactctctgcgaaaaactacgcgcggccac
gccttcccaaaagatgacgaatggcagtatgcgtttgaagcagcattcccctacgaagaa
acagacgatcagcgcatatgcattgaagaagtcaaacaggatatgcaagaagccgtcccc
atggatcggctggtgtgcggagatgtcggatacggaaaaacagagattgcaatgcgcgcg
gcatttaaggcggtaatgggaggaaaacaagtggtgttcctcacccctaccaccttacta
gtggaacaacactttcgcacaatctgcaatcggtttaaacactttcccgtcagaatcgag
aagctctcacgctttgttcctaaatctgaacaaaaggacatactcgccaaactcgcgcat
ggagatatcgatcttattgtgggtacccaccggcttatccaaaaggacgtgtccttcaag
gatcttgggttgatgatcctcgatgaggaacaacgtttcggtgtgcaggataaagaaaaa
ttaaagcagatgaaaactaatgtagattgtctctccctcagtgcaacgcccattccccga
acgcttcacatgggtatgctcaaaatcagagacatgagcttgctcaccacccctcctgaa
ggccgcctacctatagaaacggttatccagcagtttgatccaaaccttgttgccactgca
atcagaaaagagctagatcgtgaggggcagattttttacctacataacagaatcgaaaac
ttagaatccgtaaagtgtatgctccaaaaactcgtgcctgagctatccatatgcgttgcc
cacagtctcatggggtcagaagaactggaagacatttttgaaaggttttatcaaaaaacg
ttccagctcctgctttctaccaccattattgaaaatggtatcgacgttcccaatgcaaat
actatcatcatagatagagctgatatgtacggggtttcccagctctaccaactcagggga
cgcgttggtcggtctgacaaaaaagcatatgcgtatctgctgtactatcacgacgtggca
ctttcagaccttgcaataaaacgtttacaggtgatctctgactttactgaccttggggcg
ggtttcaaagtcgccttaaaagatatggagattcgcggggtaggaaatctattaggcaaa
gaacaatcaggagatatctattcagtcggattcgacctgtatgtacagctgttagaagag
gcaatagaacgcctccaacatgctccaaacgagcaaaggatagaaaccgtcatcgatctt
aattaccgagggttcatcccccatatgtacattgccgcagatgaaattaaaatggaactg
tataaaaaaatcgctgcagctcatacgcatgaggagcttgagcgcatacgcacggaaact
atcacccggttcggtcctatccctgaggaagcagctgggttgtttaccgtggcagaaatc
aaagtgcggtgcgaaaagctcgccattctctcactcaaagaaacacacgaaagcttattg
attgagtttgacaaggtctgcgacactgccttcaaaaagatactgcgcctggtacagacc
tccaacgatcgcgttcgccttgacgcaaagcagcccaacatgctgatcctcacatcagat
gccattgaaataaaagagaaaggcatctttatttgtgaaatactcaagcgtcttgagtca
taa
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