Candidatus Tremblaya princeps PCIT: TPPCIT_135
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Entry
TPPCIT_135 CDS
T01563
Symbol
rpoB
Name
(GenBank) putative DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpn
Candidatus Tremblaya princeps PCIT
Pathway
tpn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPPCIT_135 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpn03021
]
TPPCIT_135 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpn03400
]
TPPCIT_135 (rpoB)
Enzymes [BR:
tpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPPCIT_135 (rpoB)
Transcription machinery [BR:
tpn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPPCIT_135 (rpoB)
DNA repair and recombination proteins [BR:
tpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPPCIT_135 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AEI75191
UniProt:
F7XYL5
LinkDB
All DBs
Position
complement(118611..122483)
Genome browser
AA seq
1290 aa
AA seq
DB search
MTLQHTAWRLRLAPYAPSSPSPDLLGVQRSAFHRFTQHSTHPSARYPYGLQRMLFSMFPM
MSHDGAALIELVKYTIGKPCSTAAECLRSGLTYSAPLTLTLKITSRTPSNDGTWHVRYAR
SRQVYLGDVPMMNRKGSFIVRGKARTLLVLQARAYGLFFVHDIPSYREETKVYRLRIVPH
RGTWLDLAIHDGAVLFRLNDGVSMPATILLKGFGASTEAIAGMLTPRAGIAISPGGASIA
IDLSDIAFDVQHFDTRLGHARLTRRLALCRGRLDGLSMHIEDYDVVNKFELASDACIGGR
TVTSGTLLSQRVISMARAGRESYMAAENRCHHGAYLRHIARTLRMDRTIDPHDARACIAG
HIGTMRHLDPAEAHSIFQGIMENPRAYCLSPCGRSQLNARTGRHLSTGDTLDARDIALSL
KLLINASRRNERPDDVDDMSNRKARDACDALSAALRPAFLGLERRLRSYAANSRPGEAIA
ILLGMHAVTHQAYDSLTNSRLAQPLDLTNPLAEVTHKRRMAIIAGGDSRPRRAPLGARDV
HATHYGRLCPVETPEGQNIGLIASLAAHARINAHGTILAPYVATRRNAARAVARYISTQE
EVGAMSAPSALLRHTRRRAIMARIGHGVAMVHPSKVMLVDGANEMPLSAATATIPFLEHN
DACRALMGSNMQRQAVPCCYPRQPRVLTGMEQAVAQHAMVAIRARYAGRVAYVDPLHIAI
VPICENQGPACTYRLARNARTNHGTQADHRPTVMPGSDVQAGDVIADGPACDGGVLALGR
DVLVAFMPWDGYNYEDSVAVSEELRRNSTYTSVHLDEVSVEIDDEDGCGTVLSRCVPGIT
KSQRDRLDELGIVRVGSMVSPGDIIVGRISPRHAGIAPKGNSLLRTAWAPRSQAHRDSSI
RATQGMTGTVVYARIEPCNQPDVLDDQSWRHAGEQALLRRIQHGARSTHRWASARDPYIW
MSRNSLAAAPYARSEHAAPGLHPYDNAPRTIKVAIASRIALQPGDKVSGRHGNKGVVSKV
VPIEDMPYLKNGRSVDVIVNPLGVPSRMNVGQLLETHIGLASIALEVRANNAERLLCSDS
AYHDAMCHGLMAGDGRTYPACSAADGGAHGHGVTLCMLCPAFDGPSEAEIRSMATAAATQ
GVRFKHGLHRRHQAILYDGRTGTQYDRPVTVGYMYYLKLNHLASNKVHSRSTGPYSSVTE
QPLGGKARMGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRMQDHIAQDVRPLS
YGTPESIGLLIRELRSLCVDVVAEQEQEQA
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctacagcacacagcatggcgcctaaggctggcaccctacgccccatcgtcgcca
tcaccagaccttcttggtgtccagaggtctgcattccataggttcacgcagcacagcacc
catccctcagccagatatccatacggactacagcgtatgctcttctcaatgtttcctatg
atgtcgcacgatggtgctgctctcatagagctcgtcaagtacacgatcggcaagccatgc
tcgacggcggcggagtgcttacgcagtgggctgacatactcagctccgctaacgctaacg
ctgaaaatcacctcccgtaccccttccaatgacggcacatggcacgtaaggtatgcacga
tctcgccaagtataccttggtgacgtgccaatgatgaaccgtaagggcagcttcattgta
cgcggcaaagcacgaactctccttgtgctccaagctcgtgcctacggactgtttttcgtc
catgatataccatcttatagggaagagactaaagtttaccgccttaggatagtgccacat
cgaggcacatggctagacctagccatacatgatggtgcagtgctgtttaggctcaacgat
ggtgtttccatgccagcaacaattttactcaagggctttggtgcttcgacagaggccatt
gcaggcatgctcaccccaagggcaggcattgctataagcccaggtggcgccagcattgcc
atagacttgtcggacatagctttcgatgtgcagcacttcgacacaaggctaggccatgcg
cgcctaacacgtagactagctctatgtagaggccgccttgatgggctgtcgatgcatatt
gaagattatgacgtggttaataagttcgagctggccagcgatgcatgcatcggaggacgc
acagtaacaagcggcaccctgctatcccagagggtcatatcaatggcgagggcgggtaga
gaatcttatatggcagcagaaaaccggtgccaccatggagcctacctgcgccacatagca
cgcacgcttcgcatggacaggacgatcgacccgcacgacgcaagggcatgtatagctggg
cacatcggcactatgcgccacctggacccagccgaggcgcacagcatatttcaaggcatc
atggagaaccctcgcgcatactgcctctcgccatgcggccgaagccaactcaacgccaga
acaggaagacacctcagcacaggggacacgttggacgcacgcgacatagcgttatctctc
aagctactaatcaacgcctcaaggcgtaacgagcgacctgacgacgtggatgacatgagt
aatcgcaaggctagggacgcttgcgatgcgttgtccgcggcgctaaggcctgcgttcctt
ggattggagcgcaggctaaggtcctatgccgcgaacagtaggccaggtgaggccattgca
atcctgctaggcatgcatgcagtcacgcaccaagcctacgactcgctaacaaactccagg
ctagcacagccactcgatctgactaatccactggcagaggttacgcacaagcgccgcatg
gctataattgcaggtggcgatagccgccctcgtcgggccccattgggagcacgcgacgtt
cacgcaacccactacggccgactatgcccggtagagaccccagaggggcagaacataggc
ctaattgcctctctagcagcgcacgcaagaatcaatgcgcacggcactattcttgcgcca
tacgttgcaacaagacgcaatgccgcaagggccgtggcgcggtacatttcaacgcaggag
gaggtgggtgcaatgtcagcaccatcggcactattgcggcacactaggcgcagggcaatc
atggcacggatagggcacggggtcgcaatggttcacccatcgaaggttatgctagtcgat
ggagcgaacgaaatgccactatctgctgccactgctacgattcctttcctagagcacaac
gacgcatgccgagctcttatgggctctaacatgcagcgacaggcagtcccatgctgctat
ccacggcagccgcgcgtccttactggcatggagcaagctgttgcgcagcatgccatggtc
gctatacgcgcacggtatgcagggcgcgtggcttacgtcgacccgctgcacatagccata
gtgccgatatgcgagaaccaagggccggcgtgcacataccgcctagccaggaacgctaga
acaaaccacggcacgcaggcagaccataggccgacggtaatgccaggatcggacgtacag
gctggcgacgtaatagccgacgggcctgcctgcgatggcggagtgctggcgctagggagg
gacgtgctggttgctttcatgccatgggacgggtacaattacgaggactcggtggccgtg
tctgaggagctacggcgcaatagcacctacacatcagtacacttggacgaggtctctgta
gagattgacgacgaagatggctgtggtacggttctgtcaagatgcgtgccaggcataacg
aagtcgcagcgcgacaggcttgacgaactcggcatagtgagggttggctcgatggtatcc
ccaggggatataatcgttggaagaatatccccacgccatgccggcattgcaccaaagggc
aacagtcttctacgcacagcatgggcaccacgctcgcaggcccacagggactccagcata
agggcaacgcaaggcatgaccggcaccgtggtttatgccagaatcgagccatgcaaccag
cccgatgtgcttgacgatcaatcttggcggcacgcaggagagcaggcattgctgcgacgc
atccagcacggcgcgagatcaacgcaccgttgggcatcagcgcgcgatccgtacatctgg
atgtcgcgcaatagcctagctgctgctccctatgccaggtcggagcacgcggcgccaggc
ctgcacccatatgacaatgcgccgcgaacaatcaaggtcgccatagcatcacgcatcgct
ctacagccaggtgataaggtctcggggcggcacggaaacaagggcgtcgtgtctaaggtt
gtgcctatcgaggacatgccttacctgaagaacggccgttccgttgacgttatagtaaac
ccgcttggagtgccatcaaggatgaacgtggggcagcttctagagacgcacataggcctt
gcatcaatcgcgctcgaggtacgtgcaaacaacgccgagcgcctgctgtgctcagactca
gcctatcatgacgctatgtgccatggccttatggccggcgatgggcgcacataccctgca
tgcagcgcggcggacggaggggcgcatgggcatggagttacgctttgcatgctgtgccct
gcgttcgacggcccgagcgaagcagagatacgcagcatggctacggctgcagcaacccag
ggcgttaggttcaagcacggcctgcatcggaggcaccaggcgatactatacgacggcagg
actggtacacagtacgacaggccagtcacagtgggttatatgtactacctaaagctaaac
cacttggcaagcaacaaggtgcacagcaggtcaacaggtccctattcgtcggtgacagag
cagcctcttggtggcaaggctcgcatgggaggtcagcgtgttggagagatggaggtgtgg
gcgctagaggctcatggcgctgcgttcacgttgcaggagatgctgaccataaaatccgac
gacgtaggagggaggcgtaggatgcaggatcacatagcgcaggatgtgaggccgctgagc
tacggcacgccggagtccataggcctcctgataagggagcttaggtcactgtgcgtggac
gtcgtggcagagcaggagcaggagcaggcatga
DBGET
integrated database retrieval system
