Treponema pallidum subsp. pallidum Mexico A: TPAMA_0105
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Entry
TPAMA_0105 CDS
T02273
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase I
Organism
tpo
Treponema pallidum subsp. pallidum Mexico A
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
RNase_T
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AFU66136
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Position
115819..118812
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AA seq
997 aa
AA seq
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MQEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFRSLHTLLCHYRPRYFVA
VFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEADDLIAT
LAKRVAAEHCHVVIISSDKDVLQLVCDTVQVLRLDIDHKWTCCDAAYVQQRWTVMPTQLL
DLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEALRTKIVCGKKDAF
FSRSLIELRDDVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEIDTEATN
DTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELKTSAVSGAIPIENRDLRQ
DVMLARSAGHYRGVTDPVELKRIIDCACANGVVAFDCETDGLHPHDTRLVGFSICFQEAE
AFYVPLIVPDVSLHTESTQCTCARSTNVETEKECTEQHGVSASAVQDPAYVQAVMHQLRR
LWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASF
FQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETI
EMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTV
LFQELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLFRDLSKLRSTYTESLAKLADQ
TGRVHTSFVQIGTATGRLSSRNPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIEL
VVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAF
RLSDELKISQKEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSR
NTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAA
ETAIVKEILFAEMEHAVELSIPLRIHVESGNSWGDFH
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagaaaaaaacgctttaccttcttgatgcctacggacttatttatcggagttac
cacgcgttcgcgcgtgcgccgttgattaacgacagcggtgcgaatgtttctgccgtatat
ggtttttttcggagtttgcacacgctcctgtgtcactatcgaccccgttattttgttgct
gtttttgattctctcacgcctacctttcggcacgtacagtacccagcctataaggcaaaa
agggataagacttctgcagagctttatgcgcaaattccccttatcgaagaaatcctgtgt
gcactgggcattacagttttgcgtcatgacggctttgaagctgacgacctcattgcaacc
ctagcaaaacgagttgcggctgagcactgtcatgttgtgattatctcctcagataaagat
gtacttcagcttgtgtgtgatacggtgcaagtgctcagacttgacatagatcataagtgg
acatgttgcgacgctgcgtacgtacagcaacggtggacggtcatgccaacacaattactt
gatttgttctctctcatgggagattcctccgacaatgtgcctggtgtgagagggattggt
cctaagacggctgcacatcttctccactgttttggcacacttgatggtatttatcgtcat
acctattccttaaaagaagcgctgcgcacgaagatagtgtgtgggaagaaagatgcattt
ttttctcgttcactcattgagttgcgtgacgatgtaccatgtgttttttcgctcgaagat
tcctgttgtattccgctcgatgtaacgtctgctgcacgtatttttgtgcgagaaggattg
catgcgcttgcacaacaatatcgtgcttgtgtgcaagaaatagatacagaagcaacaaac
gatacattacaaatgacagagtcttctgtgctcacgtctggtcgatgtgcaaatgagtgt
ttcttatctcaggtagaagggagggctagtacaccggaggtgaactccgtattgaagtcg
gagttgaagacgagtgctgtgtctggcgccatacctatagaaaatagagatcttaggcag
gatgttatgcttgcacgcagtgcaggtcattatcgtggtgttactgaccctgtagaactt
aaacgtattattgattgcgcgtgtgcgaatggtgtggtcgcgtttgattgtgaaacggat
ggattgcatccgcacgatacacgtctggtcggattttcgatctgctttcaggaagcagag
gctttttatgttcctcttattgttccggacgtttctcttcataccgagtcaactcagtgt
acatgtgcacgtagcactaatgtcgagactgaaaaggagtgcacagaacagcatggggta
tctgcatctgctgtgcaggatccggcatatgtccaagctgtcatgcaccagcttcgacgt
ctttggaatgatgagacgctcacacttgttatgcataatggaaagtttgattatcacgtt
atgcatcgtgcaggcgtttttgagcactgtgcatgtaatattttcgatacgatggttgca
gcttggttgctggatcccgatcgcggtacatacggtatggatgtacttgccgcatcattc
tttcagatcagaacgattacatttgaagaagtggtagcaaaagggcaaacctttgcgcac
gtcccttatgagtgtgcagtccgctatgcagcggaggatgcagatattacttttcgttta
taccattatttaaaactccgcttggaaacagcaggattgctttctgtgtttgagaccata
gaaatgccgcttttgcctatcctagcacgtatggaagaagtggggatttttttacgtaag
gatgttgtgcagcagctcactcgatctttttcagatttgatccagcagtacgagcacgat
attttttctcttgccggtcatgaatttaatattggttctccgaagcaactgcagacagtc
ctttttcaagaattacatttaccgcccggtaaaaagaatactcaaggttattctactgat
cattctgtattgaagaaacttgcacgtaagcatcccattgcagaaaaaatattgctcttt
agagatctttcaaagttacgttcgacgtataccgaatcgcttgcaaaacttgctgatcaa
acagggcgtgtacatactagctttgtgcaaattggtaccgcaactggaaggctttcgagt
agaaatccaaatttacaaaacattcccattaaaagcacagaaggaagaaaaataaggcag
gcgtttcaagctactgttgggcatgagttaatttcggcagactatacacaaatagagctg
gtcgtgttggcccatctatctcaagatagaaatcttctcaatgcatttcgacagcacatt
gatattcatgcattgactgctgcatatattttcaatgtgtctatagacgatgtacaacct
gcaatgagaagaatcgcaaaaactattaactttggaatcgtgtatggaatgagcgctttt
agattgagtgacgaacttaaaatttctcagaaggaagcgcagagcttcatttaccgttat
tttgaaacgtacccgggggtgtatgcttttagtacacaggttgcagagcagacacgtaaa
accggctatgtgactagcttggctggaagacgacgctacatccgtactatcgatagtcgc
aatacgcttgagcgcgcgcgtgccgaacgtatggcgttgaatactcaaattcagagttct
gcggcggatattgtgaaaattgccatgatagcaatccagcgtgcgtttgcgcgccgaccg
ttacgtgcacaattgttgctgcaggtacacgatgaattgatttttgaggcgccagctgct
gagacagcgatagtgaaagaaattctctttgctgagatggaacatgctgttgagctctcg
atcccgctgcgtatacacgtggagtctggaaatagttggggtgattttcattag
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