Treponema pallidum subsp. pallidum Mexico A: TPAMA_0380
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Entry
TPAMA_0380 CDS
T02273
Name
(GenBank) putative DNA repair helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
tpo
Treponema pallidum subsp. pallidum Mexico A
Pathway
tpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TPAMA_0380
09124 Replication and repair
03420 Nucleotide excision repair
TPAMA_0380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpo03021
]
TPAMA_0380
03400 DNA repair and recombination proteins [BR:
tpo03400
]
TPAMA_0380
Enzymes [BR:
tpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPAMA_0380
Transcription machinery [BR:
tpo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TPAMA_0380
DNA repair and recombination proteins [BR:
tpo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TPAMA_0380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFU66386
LinkDB
All DBs
Position
complement(406445..408265)
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AA seq
606 aa
AA seq
DB search
MTSVPKPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRLTPLSLWNAAS
AGFSPQMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRLREDTTHSTLLRLQVRDAHIA
REIAASKSLASHLSPTTACLQDGPLPTPDTARIAQPDTTPQVQGAQTGCSYDFLLPRLHR
GTVKQLLLRHGWPVHDEVPLREGTPLSLRLRISPASCPPPSTAYPCCHTPGTPSFVPRDY
QWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAAQQWKRE
LCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFMERSWGLIIYD
EVHLLPAPLFRITAELQVVRRLGLTATLVREDGCAQDVFSLVGPKRYDVPWKDLEARGWI
ARVRCVEVRVTMDRSLQYQYMTAPVRLRHRLASENEAKVAVVQRLLRAHAGAPTLIIGQY
VQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFREGTLQVLVVSKVANCALDLPDASVAIQ
VSGTFGSRQEEAQRLGRLLRPKICDAHFYSLVTEQTVEEDCALRRQRFLVEQGYTYETLR
VSEVHE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
gtgacttctgtaccaaaaccgcttatcatccaagcagaccgctccattttacttgatgtg
cacgctcctgaggcggtagcagcacgcaaggcgctcgtttcctttgcagaactggaaaaa
tctccagagcatctacacagctaccgactcactcctctttctctgtggaacgccgcgagc
gcaggattcagcccccagatgattgcacaaacactgacgcgtttctcacgcttcactccc
ccgcaaacagtactcgactgggtagtggatatcatgagccgctatggcaaaattcgcctt
cgcgaggatacgacgcacagcaccctactgcgccttcaggtacgcgacgcacacatcgca
agagaaattgccgcctcaaaaagtcttgcatcgcacctttcccccacaaccgcttgcctg
caggacggtccgctgcccacaccggacactgcgcgcattgcccagccggatacgacacct
caggtgcagggtgcacagactggatgcagttacgactttctattgccacgcctccaccga
ggcaccgttaaacaattactcttgcgccacggatggccggtgcatgatgaagtgcctctc
cgcgagggaactcccctatccttgcgcttacgcatctctccggcttcgtgtcctcctcct
tctactgcgtatccgtgttgtcacacgccagggacaccctcgtttgtgccacgtgactac
cagtgggaagcagccgatgccttcgtcgggaatcgcacacaagggagcggatttggtgtg
gtagttttgccgtgtggcgcgggaaaaacggttgtcggtttactcgttatgggtctgttg
caaacggataccctgattctgactcctaatagcgcagctgcacagcaatggaaacgtgaa
ttgtgtgaaaaaaccgacctggacgggacatccatcggtatctattcaggagaatgcaag
gaaatcagaccagtgactatcgcaacctaccagatactcacctggcgtgcgcatgcagac
gctcccttttcccatttccgtctctttatggaacgcagttggggtttgattatttacgat
gaggtgcacttgctccctgcaccgcttttccgtatcaccgcagaacttcaggtggtacga
cgcttgggattaactgcaacgctcgtgcgagaagatggctgtgcgcaggatgtgttcagc
ctcgtaggaccgaagcggtatgacgtgccgtggaaggatttagaagcacgcggctggatc
gcacgggtgcggtgcgtagaagttcgggtaacgatggaccggtcactccagtaccagtac
atgacagctcctgtgcgcctgcgacatcgccttgccagcgagaacgaagcaaaagtagcg
gtggtacagcgtctattgcgcgcacatgcaggtgcgcctacactgattattgggcaatac
gtgcagcagttattacatctcgcacacgtactgcaggtgccactggtgagcggaagacaa
acttatgcggcgcgtgaagccatctatcagcgttttcgcgagggcacgctccaggtgctc
gttgtatcaaaggtggcaaattgtgcgcttgatcttcctgacgcgtcggttgcaattcaa
gtttccgggacatttggcagccgtcaggaggaggcgcaacgcctcggacgcctcttacgg
ccaaagatatgcgacgcccatttttactcgttagttacagaacaaacggtggaagaagac
tgtgcactgcgtcgccagcggtttttggtagagcagggttacacgtacgaaacccttcgc
gtaagcgaagtacacgaataa
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