Treponema pallidum subsp. pallidum Mexico A: TPAMA_0805
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Entry
TPAMA_0805 CDS
T02273
Symbol
rnb
Name
(GenBank) putative exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tpo
Treponema pallidum subsp. pallidum Mexico A
Brite
KEGG Orthology (KO) [BR:
tpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpo03016
]
TPAMA_0805 (rnb)
Enzymes [BR:
tpo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TPAMA_0805 (rnb)
Transfer RNA biogenesis [BR:
tpo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TPAMA_0805 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFU66787
LinkDB
All DBs
Position
complement(875633..877738)
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AA seq
701 aa
AA seq
DB search
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLHPGTVSSLVEL
LSASHIARISEESVQDAREFFGTEAPSFFELAELLWGASAAQSWAYWEQSVQSAYFVCNE
PAAAVRIRSQQECASCAVQEEKKEARQALKQAFIQELRRVARSARNMAPTAQEGMHRVHV
SQVNEQFTPFLQEIEAFALGHANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDR
LCPLFLSPAHVSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFD
GTYFWIHVASPAELVLPDSHADACARTRGASLYLPEGAVRMLSDVVVDTCALARDAVSPA
LSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTPALQPLFDFARNNIARRKGRG
AVDICFPDVHMRVDFPVQETGQAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFM
LLAGEAAARFAFLHNLAFPYVSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAA
LGLSQYSQVTSPLRRYVDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAAR
QATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHVWLPAVALEADVALGRQAQFN
ERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQPS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgatggaactacatgtggggagtccggtgctctatcgaaagcgccctgcgtgtgtacac
gctatcgagcgagggaaggatgcgaagatcaccattgaaaccgaacacgggttaagacgc
gtgcgcgtgaaagacgttttgctcttgcacccgggcactgtttcttccctggtagaacta
ttgtctgcgtctcacattgcgcgtataagcgaggaatccgtacaggacgcgcgcgagttt
ttcggtaccgaagctccttccttttttgaacttgcagagctcctctggggggcttctgcc
gcgcagtcgtgggcctattgggagcaaagtgtgcaaagtgcgtattttgtttgcaatgag
cctgccgccgcagtgcgcatccgctctcagcaagagtgcgcatcctgcgcagtgcaggaa
gaaaaaaaggaagcgcgtcaggcgttaaagcaggcgttcatccaggagctacggcgcgtc
gcacgaagtgcacgcaatatggcaccaactgcgcaggaaggaatgcatcgtgtgcacgtg
tcgcaggtgaacgagcagtttacgccctttctgcaggaaatcgaagcgttcgcgttgggg
cacgcgaatcgctgtaagattttgcagtgtgccttaggctgcgagcacagggagcaagcg
catgaaatactcttgcacttcgggttctggccggtgtatcgcaatccgtatcctgatcgt
ctgtgtcctctatttttaagtcctgctcatgtgtctggttctgatggagaacgtgcggcg
cagcaagatgtgcacacacataggtgtgtcactcaagcacgcacagattgtacgcatctt
gccgcgtatgccatcgatggggagggtacgcgcgaccctgacgatgcgatcagtttcgat
ggtacgtatttttggatccatgtagcgagccctgcagagctcgttcttcctgattcgcac
gcagatgcatgcgcacgtacacggggtgcttcgctctatttgcctgaaggcgcagtgcgc
atgctcagcgacgtggtggttgatacgtgtgcactcgcgcgcgacgcagtttctcctgca
ctgtcttttaaaattttacttgatgagcacggtgacatcagctgtgtgcacgtgctccgg
agcatggtgcgtgttacgcgcctttcctatgcggaggcggattcccagcgcgataccccc
gcgttgcagcctctttttgactttgcgcgcaacaacattgcacggagaaaagggcgcggc
gcagtggacatttgctttcctgatgtccacatgagggtagattttcctgtgcaagaaaca
gggcaagcgggaaaggaaatgaacgccggggacgtgcccgatacacagggaaaggtgccg
cgtgttcacattgaagcacagcagtcgtacgagtctatgagcatggtgcgtgaattcatg
ctcttagcgggagaagcggcagcacggtttgcctttctacataaccttgcctttccttat
gtgagtcaggaacgtcctcagctgcccgtgcaactaccagcgggattggcgggggagtac
aaaaagcggcgcgcgatgaaagctcgtcgcgtgagcacaaccgccgcggtgcacgcagca
ctcgggctgtctcagtacagtcaggtgaccagtcctttgcgtcgctatgtggatttgctt
gcgcatcaacaattactggcgtgtattgatcacgcgtatgcaaaagctcctgctgtagga
agtgcacagacaaacgagacgcttgcgctcaagcttgcgcaggcagatgaggcagcgcgc
caggccacacaagcagagcgtgtatcgcgtcgtcactggacgctcgtatactttttgatg
cacccacacacgcggtacgaagcgattgtgttggagccactgcaaccgcgtgcacacgtg
tggttacctgctgttgctcttgaggcggatgtagcattaggtcggcaggcgcagttcaac
gaacgcgtaatgctccgtgtcgtgcgtgtgcgccttgccacgttagaagtacatttttct
gtctgcgagcactgtcaccgcggcgtgacgcaggctgtagaaggtgaggcggagcagccc
tcataa
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