Treponema pallidum subsp. pallidum Mexico A: TPAMA_0898
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Entry
TPAMA_0898 CDS
T02273
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
Organism
tpo
Treponema pallidum subsp. pallidum Mexico A
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFU66877
LinkDB
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Position
complement(977834..981553)
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AA seq
1239 aa
AA seq
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MTDFLFSFFQSLNAEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVV
LTFTRKAAMEMARRIYEDLRLCVQSASAQPEPGHEAYLLRAREALARFGEARIMTLDAFS
HEIARVGARFFGIAPDFSLSEEENRALAHECAEDFFLEHREHPVVLHFLQQEHAEDCVRE
LFFIPLQDHGILTHPCDFRAGLAHQIATARGLLKTVLCDIHAALHAIRHHMQEADAQNAL
IARCVALFAAQDTAFSYTPAAEADAIADAFLARGYEEYAAKPDEFSVSDPDEGARRAAHD
CLRYCAAVKTLFCLKGNLGGRAGAAQAIKAQVKQLRLQLVPQMERLHAFFAQVPFLVALS
SLLELLQARFIRQKRERNCLSHADVAHLAVQVLRQYPEIRVSYKRGIDAFMIDEFQDNNA
LQKELLFFLAEHEARTAHFLPPAHALCAHKLFFVGDEKQSIYAFRGADVRVFRSLAGVLT
PQVSGASQQELPLSAAAELQPTLQTLRINYRTEAALLERLNILFSHILRGPSESAENGYE
VGFQYMQPARCTAGIEPQFRVIGVDRHRFSRPEHEAQHSAARPTPQAGRTGASEDSEDSL
SAQETEAWALARAIRAMVDGGTLVRHKGEAPRACTWADVVILLRSADKQARYERALRLWG
IPYTSLQTRGMFCDAPLSDLLAPLRLVLEPADRHVYAQVLRGPFVRVDDDTLSLLLLPPA
PPDAPFSYIPAELSAPAARCVRAGADFFARVQQQVRRLATNTELLTYLWYTEAYGTLLAQ
DPLARPYHVIYDYAFELARRADRQGKGIGEFLDFVDACLSAQERVEELELPCTDRACGAV
QIMSVHKSKGLEFPIVCVPDAGSSGPRVMARVGAVHSPYGYIPRFLPHPEGVHPIFVQEQ
DTRARAYRAELRRVLYVAFTRAECHVIVSGVLPISDGHPAPAVSRSLADICSLLPSGDGS
EPPSSLSFFSELLPALMHAAPLPPHPSPSVVPAPVSFDECLPLARPQAYQRALTGSARQS
VPQASAPRDWYAAVPVRAPHYYPRLVQPVTSLVSPAPGQNSASASPSPLTPQSPRGVEFG
THVHELLAQVFQSPAPTVALHSVQRVDSPAARLVASFLHSPLGCRACAAPAHQRFAEFSF
LTRAPGNTKPPHGAEYQAGTIDLLFLSNGVWHLVDYKTDYEEHPARYLPQLQHYARAVQD
LFSDHPVTAFLYYLRTGHEFSLEALESHFLKKNAVPDSE
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
gtgactgattttcttttttctttttttcaaagtttgaatgcagagcagcggcgtgcagtt
ttttcttcgcataatgcagttgttaccgcaggtgcaggttcgggtaagacgaaggttatt
agcgcgcggtatatacacctggttgtggagcgggcaattccggttgaacggattgtggtg
ctcacctttaccagaaaggcggccatggaaatggcgcgcagaatttatgaggacctccgt
ctgtgtgtacagagtgcgtctgcgcagccggagccggggcacgaagcgtatctgctgcgt
gcgcgtgaggcgcttgcgcggtttggggaagcgcgcattatgacgttagatgccttttcg
cacgaaattgcgcgggtaggcgcgcgctttttcggtatcgcgcctgatttttctctcagt
gaggaagagaaccgcgcgctggcacacgagtgtgcagaagatttttttcttgagcatcgg
gaacatccagtggtactgcattttttgcagcaggagcacgccgaagactgcgtgcgagaa
cttttttttattcccttgcaggatcacggcatacttacacatccctgtgactttcgtgca
gggcttgcgcatcaaattgctacagcgcgtgggttattaaaaacggtgctctgcgatata
cacgcagcattgcacgccattcggcaccatatgcaagaggcagatgcgcagaatgcgctc
attgcgcgctgcgttgcgctgtttgcggcacaggatactgccttttcctacacgccggct
gcagaagcagatgcgattgccgacgcgtttttggcacgtgggtacgaggaatatgcagct
aaacctgatgagttttctgtgtctgaccctgatgagggagcgcggcgcgctgcacacgat
tgcctgcggtattgtgcggcggtaaaaacgcttttttgtctgaagggtaatttagggggg
cgcgcgggtgcagcacaggcgataaaagcacaggtaaagcagctgcgtcttcaacttgta
ccgcaaatggaacggctgcacgcgttttttgcgcaggtaccgttccttgtggcactcagc
tcgttgctcgagcttctgcaggcgcgttttatccggcaaaaacgggaacggaattgtctc
agtcacgccgatgtggcgcatcttgcggtgcaggtgttacgtcagtatccggaaatacgc
gtttcttacaagcggggtatcgatgcgttcatgattgacgagtttcaagataacaatgcc
ctccagaaggaacttcttttttttcttgccgagcacgaagcgcgcaccgcgcacttcctc
cctcctgcacatgcgttgtgcgcacacaagttgttttttgtgggagatgaaaagcagtcg
atttatgcgttccggggtgcggatgtgcgggtatttcggtctctggcaggcgtactcacc
ccgcaggtcagtggcgcgtcccagcaggagcttcctctttccgctgctgcggagctgcag
cccacacttcagacgttgcgtatcaattaccgaacagaagcggcgctccttgagcgcctc
aacatactgttttcacatattttgcgtgggccgtctgagtctgccgagaacgggtacgag
gttgggtttcagtatatgcagccggcccggtgtactgccggtattgagccgcagtttcgg
gtgattggagtggatcgtcaccgtttctccagaccggagcacgaagcgcagcactcagcg
gcgcgcccaactcctcaagcagggaggacaggcgcgtctgaggactcggaggattctcta
tcggcgcaggagacagaagcgtgggcgcttgcgcgtgctatccgtgccatggtggacggc
ggcaccctggtgcgccacaagggggaggcgccgcgcgcgtgcacgtgggcggacgtagtg
attctgttgcgttctgcagacaagcaggcgcggtacgagcgcgcgctgcgtctgtggggt
attccgtacacgtcgcttcaaacgcggggtatgttttgcgatgcgccgctgtctgatctc
cttgccccgctgcgtttagtgctcgagcctgccgatcggcatgtgtacgcgcaagtgctc
cgcggtccgtttgtacgggtcgatgacgacacgctttctctgttgctgctcccacccgca
ccccccgacgcccctttttcgtatatccccgcggagttatcggcgcctgcggcgcggtgt
gtacgtgcaggcgcggacttttttgcgcgcgtgcagcagcaggtgcggcgcctggcgacg
aataccgagctgctgacctatctgtggtacaccgaggcgtatggaacgctgcttgcgcaa
gaccccctggcgcgtccgtaccatgtgatatacgactatgcgtttgagcttgcgcggcgg
gcagatcggcagggaaaggggataggagaatttttagattttgtagatgcgtgtctgtct
gcccaggagcgggtagaggagctggagctgccttgcacggaccgcgcgtgtggggcagtg
cagattatgagcgtgcacaaaagcaaggggcttgagtttccaattgtgtgtgtgccggac
gcggggagttctggaccgcgagtgatggcgcgcgtaggcgcggtacactccccgtacgga
tacattccccgatttttgcctcaccctgagggggtgcatccgatctttgtgcaggaacaa
gacacgcgcgcccgggcgtaccgcgcggagctgcgacgcgtgctctatgtggctttcacg
cgggctgagtgccacgtgattgtcagcggggtactgcctatttctgacggacatcctgct
cctgccgtttctcggtcgttggcggacatctgctctctgctcccctctggtgacgggagt
gagcctccttcctccctctctttcttttcagagctgctccctgcgcttatgcatgcagcc
ccccttcctccccatccttctccctctgtggtgcccgcaccggtgtcgtttgatgagtgt
ctgccgctggcgcgccctcaggcgtatcagcgcgccctcaccgggtcagctcgccaaagc
gtgccgcaagcatccgcccctcgggattggtacgctgcagtgcctgttcgcgcaccccat
tattatccccgtcttgttcagccggtgacgtccctggtttctccggctccggggcaaaac
tcggcttccgcttctccttcgcccttgaccccgcagtccccccgtggcgtggagtttggc
acgcacgtgcatgagctcttggcgcaggttttccagtccccggcgccgaccgttgcactc
catagcgtacaacgtgttgattcccctgcggcacgccttgtggccagctttcttcactcc
cccttgggctgccgtgcatgtgcagcccccgctcaccagcgttttgcggagttttccttt
ctcacccgcgctccaggtaatacgaaacccccacatggagcggagtaccaagccggcacc
attgatctcctcttcctttccaatggggtgtggcaccttgtggactacaaaaccgattac
gaagagcacccggcgcgttatctcccccagttgcagcactatgcacgggcggtgcaggat
ctcttctcggaccacccggtgacggcctttctgtattacctccgaaccgggcatgaattt
tctttggaagcgttagaatctcattttctgaaaaaaaacgcagttccggattctgaatga
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