Thalassoglobus polymorphus: Mal48_13240
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Entry
Mal48_13240 CDS
T09805
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tpol
Thalassoglobus polymorphus
Pathway
tpol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal48_13240 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpol03019
]
Mal48_13240 (cshA)
03009 Ribosome biogenesis [BR:
tpol03009
]
Mal48_13240 (cshA)
Enzymes [BR:
tpol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mal48_13240 (cshA)
Messenger RNA biogenesis [BR:
tpol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mal48_13240 (cshA)
Ribosome biogenesis [BR:
tpol03009
]
Prokaryotic type
rRNA helicases
Mal48_13240 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_C_2
AAA_30
DUF6892
Motif
Other DBs
NCBI-ProteinID:
QDT32083
UniProt:
A0A517QKC0
LinkDB
All DBs
Position
complement(1649569..1650897)
Genome browser
AA seq
442 aa
AA seq
DB search
MKSAFQTPIAKDMTGASLKIDSTSAKHLMAATETLPTFESLNLNSELLDTIKSLGFTAPT
PIQKELIPVALTGVDCIGQARTGTGKTAAFALPILQNLNRKSQHIQALVLAPTRELSEQV
AQEFRYLAGGSPCEVVLTVGGRPLGPQIKSLERYPQVVIGTPGRVIDLIQRKVLKLDHIS
TMVLDEADRMLDIGFRKDIERILRSCNDDRQTLLLSATLPDQVQQLANRFMREPRRIDLS
DDHVVVDTIEQFYCTVERKNKFQLLIKLLIQERPSQAIVFCRTKRSAHEIYTKIQKYLSD
VEAIHGDLQQRKRDQVIRRLRDGRARLVIATDIVGRGIDISGISHIINYDIPEGSDDYIH
RVGRTGRMSSDSDGRAFTFVTPEQGGELTKIEMRINQLLQEYQFEGYDAFSAREIRTVPE
NEAFVPTPASEQEWDSIFDELS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagcatttcagacaccaatcgctaaagacatgactggtgcatctctgaaaatc
gattcaacctccgcaaaacacctgatggcagcaacggaaactctcccaacgtttgagtct
ttgaacttaaacagtgaacttttggacacaattaagtctcttggatttacggctcctacg
cccatccagaaagaattgatcccagtcgctttaaccggtgtcgactgtatcggtcaggca
cggacaggcacgggaaagaccgcagcctttgcgctcccgatcctgcaaaacctgaaccgg
aagagccagcacatccaagcacttgtcctggccccgacccgagagttgagtgaacaggtc
gcgcaagaatttcgctacttggctggcgggtcgccctgtgaagtcgtcctgactgtcgga
ggacgtccgttagggccgcaaatcaagtctctggaacgatatccacaagtcgtaattgga
actcccggtcgagtgatcgatctgatccagcggaaagttcttaagctcgaccacatcagc
acaatggtgctcgacgaagcagaccggatgcttgacatcggtttcagaaaagacatcgag
cggattctccgttcatgcaacgatgatcgccaaacgctgctgctctctgccactttaccc
gatcaagttcagcaacttgccaatcgattcatgcgggagccaagacgaatcgacctgtcg
gatgatcatgttgtcgtcgacacaattgaacagttttattgcactgtcgaacggaaaaat
aaattccaactgctgatcaaacttctgattcaagagcgtccatcgcaagcgattgtgttc
tgccgtacgaaacggagcgcgcacgaaatctacaccaagattcaaaaatacctttcggat
gtcgaagcaattcatggcgacctgcaacaacgaaaacgcgatcaagtgattcgtcgcctg
cgagatgggcgagccagacttgtcattgcgaccgacatcgtgggacgcgggatcgatatc
tcgggaatctcgcacatcatcaactacgacattcccgaaggttctgatgactacattcat
cgcgtcgggagaacaggtcgcatgtcctccgacagcgacggtcgtgccttcacgttcgtg
actcccgagcagggcggggaactcacaaaaattgaaatgagaatcaatcaattgttgcag
gaatatcagtttgaaggttacgatgctttctcagcacgtgaaattagaacggttcctgag
aacgaagcttttgttccgacgcctgccagcgagcaggaatgggactctattttcgatgag
ttaagctaa
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