Thalassoglobus polymorphus: Mal48_37720
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Entry
Mal48_37720 CDS
T09805
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpol
Thalassoglobus polymorphus
Brite
KEGG Orthology (KO) [BR:
tpol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpol03016
]
Mal48_37720 (rtcB)
Enzymes [BR:
tpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mal48_37720 (rtcB)
Transfer RNA biogenesis [BR:
tpol03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mal48_37720 (rtcB)
Prokaryotic type
tRNA splicing ligases
Mal48_37720 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6641
Motif
Other DBs
NCBI-ProteinID:
QDT34511
UniProt:
A0A517QSC5
LinkDB
All DBs
Position
4866939..4868333
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AA seq
464 aa
AA seq
DB search
MNRKQLTKLGIPEYCTLEAMQGIQSAVKAGLRGKDAKQRLIAVVAAPQEYLNDEHFAEFA
NAFTEVEETEPSTPVDYAVWGNEFIDEMSHKQMREACSLPHAVAGALMPDAHLGYGLPIG
GVLALEGAVCPYAVGVDIACRMKLSVLDLPTDFLADDKRRRELTTALEKGTVFGTGKAWK
PRKDHDVMDQDWTVSRITRESKDKAWNQLGTSGSGNHFVEFGLLTITEEEAGIGVAPGEY
VALLSHSGSRGTGHAVCSTYSAIARKKLPRRYAHVGRLAWLELDSQEGQEYWAAMNLMGD
YASANHAVIHRNVVKLAGASVLGGVENHHNFAWKEVHNGREVIVHRKGATPAGEGVLGVI
PGSMATPAYVVRGKGNAASLHSAAHGAGRVMSRKKANSMYRIQSVRTNLKAQGVHVISAG
SDEVPMVYKNIEDVMNAQTDLVTKVARFDPLIVKMCGDGSRPED
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgtaagcagcttacaaaattaggaatcccggagtattgcacactcgaggcgatg
cagggaatccaatccgctgtgaaagcaggattgcgagggaaggatgcaaagcaacgttta
atcgctgtcgtcgctgctccgcaagagtatctgaacgatgagcacttcgccgaattcgct
aacgcgttcactgaagtcgaagagaccgaaccgtcaacgcctgtcgactacgcagtttgg
ggtaacgagttcatcgacgagatgtctcacaaacaaatgcgagaagcctgttcgctgccg
cacgcggtggcaggagcgttaatgcctgatgcgcacctcggctacggccttcctatcggt
ggagttttggctctcgaaggggcggtctgtccgtacgcagtcggtgtcgacattgcctgc
cgaatgaaattgtcggtcctcgatttgcccacagatttccttgcagacgataagcgacgt
cgtgagctgacgactgcgcttgaaaaaggaacggttttcgggaccggaaaagcctggaaa
ccgcggaaagatcatgacgtcatggatcaggactggacagtcagccgaattacacgtgaa
agcaaagacaaagcctggaaccagctcggaacttccggttccggcaaccactttgtcgaa
ttcggcctgttgacgatcaccgaggaggaagcaggcatcggagttgcgcctggcgaatat
gtcgccctgttgagccatagcggaagtcggggaactggacatgctgtctgttcaacttac
agtgcgattgctcgcaagaaattgccgcgacgatacgcacacgtcggtcgactggcttgg
ttggaactcgattctcaggaaggccaggaatactgggcagccatgaacttgatgggtgac
tacgcctcagcgaaccatgcagtgatccatcgcaacgtcgtgaaactggcaggcgcgagc
gtgctgggaggggttgagaaccatcacaactttgcgtggaaagaagtccacaacggtcgt
gaagtcattgtccaccgaaaaggggcaaccccagctggtgaaggtgttctgggagtcatc
ccgggatcgatggcaacgcccgcgtatgtggtccgtggaaaagggaacgctgcatcattg
cactcagccgctcacggagctggtcgagtgatgtctcgcaagaaagcgaactcgatgtat
cggatccagtcagtccggacaaacttgaaagcccaaggagttcacgtaatttccgccggc
tcagacgaagttccgatggtgtacaaaaacatcgaggacgtcatgaacgcgcaaaccgat
cttgttacgaaggtcgcacgtttcgaccctttaattgtcaaaatgtgcggagacggcagt
cgacctgaagactag
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