Thalassoglobus polymorphus: Mal48_38810
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Entry
Mal48_38810 CDS
T09805
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpol
Thalassoglobus polymorphus
Pathway
tpol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mal48_38810 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpol03021
]
Mal48_38810 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpol03400
]
Mal48_38810 (rpoB)
Enzymes [BR:
tpol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mal48_38810 (rpoB)
Transcription machinery [BR:
tpol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Mal48_38810 (rpoB)
DNA repair and recombination proteins [BR:
tpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Mal48_38810 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
BSH_YknX
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QDT34618
UniProt:
A0A517QSK6
LinkDB
All DBs
Position
complement(5000513..5004220)
Genome browser
AA seq
1235 aa
AA seq
DB search
MPIPHQRIIPTDSVRNFGKIEAKYELSDLTRIQTESYSKFLQLERKPEERRDEGLEEILR
EVFPVESYDGQYRLEYVKYELGKPRYSPTECRQLRLTYGRPFRVTLRLVKEEPIEEEVYL
GDMPIMIGGGEFIINGSERVIVSQLHRSPGVDFVVASEPGERKEYSCRVIPERGSWIEFM
VSKKETLGVRIDQSGRFSAMTLLRAMNEEYSTDTSLLEIFYKVVKTKVGKDGSDLAGLYA
AEDVAYETGERAGEIIVECCHTISATQAAEIAEAGIKVVQTLDDVRDTLILNSVIEDNTV
SHEEALLKIYQRLRPGNPPSLEKAKDLFAEKFYDVNRYRLGRVGRFRINRKFNQDIPDDE
MTLRSEDMVNAVRYLVLLRMDDDSAYVDDIDNLGNRRLRTIDELGMDEIRKGFLKLRRTV
QERMSLKDVEEMSPRTLVNPKSVSAAIDYFFGRSELSQVVDQTNPLSMLTHERRLSALGP
GGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLSIFSKVDDYGFLITPYRKVS
NGKVIDEIMWLRADEEASVHVAPADTRVENGVIIDERVLSRYRSDVHWIPAMDVEFIDVA
PCQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLIAEAPLVGTGMEEEIPRYSGMVV
RSDRAGKVTYVDANVIEVEGKKFPLRKYMGLNERTCLNQKPLVSVGQKVKKDQILADSAA
TQDGILALGRNVLVGFMSWEGFNFEDAIILSERLVKDDVYTSIHIDEFDVEIRETKLGRE
EFTRDIPNVSEKALRHLDDDGIVHVGTRVKQGDILVGKVVPKAKAELTPEEKLLHAIFGK
AGEDVKNESLEVNSGVEGIVIQTEKFSRRMSLSEADRKVFDIEVAKIQQEGQEKIAEKFQ
EFVVEFDAALGRHLADDDGREIRSIEDVKFVAQYAKSFESHFDKLDIRSPQKQADLRKLM
NEQWPFVVEVIDEAEQNLNSMKRGDELPNGVLQMVKVYVASKRQISVGDKMAGRHGNKGV
ISKVLPVEDMPYLDDGTPIDIILNPLGVPSRMNVGQILETHLGWAASKLGFRAICPVFDG
APEAEINDCLKEAGLPEEGKVRLYDGRTGEQMEQKTTVGYIYMLKLHHLVDDKVHARATG
PYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKIYESMV
KGENTLEAGTPASFDVLNNEIRGLCLNMQLEKTHT
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgccaattccacatcaacgaatcattccgactgactcagtccgtaactttggtaagatt
gaagctaagtatgaactctcggatttgacgcgaattcaaactgagtcatactcgaagttt
ctgcaattggagcggaaaccagaagagcggcgggatgaaggtctcgaagagattttacga
gaagtcttcccggttgagagctatgacggtcagtaccgtttggagtatgtcaaatacgaa
ctcggtaaaccacgttacagcccgactgagtgtcgtcagctccgcttgacttacggtcgc
cctttccgtgtgactcttcgtcttgtcaaagaagagcctatcgaagaagaggtctacctc
ggggatatgccgatcatgattggtggtggtgaattcatcatcaatggatcagagcgggtt
atcgtcagccagttgcatcgttcacctggtgttgatttcgttgttgcctccgaaccaggc
gaacgtaaagagtactcttgccgcgtcattccagagcgtggtagttggattgaatttatg
gtttccaaaaaggaaaccttaggagttcgtatcgatcagagtggtcgcttctctgctatg
actttgctgcgagcgatgaatgaagagtacagtactgacacatctttgctcgaaatcttc
tataaagtcgttaagaccaaagttggcaaggatggatcagatcttgccggtctctatgct
gccgaagatgttgcatacgaaactggcgaacgagccggtgaaattattgttgagtgctgc
cacacaatttctgcgacccaggctgctgaaatcgcggaagcgggcatcaaggttgtgcaa
accctggatgatgttcgtgacacgctgatccttaacagcgtgatcgaagataatacagtc
agccatgaagaagccttgctgaagatttatcagcgcctgcgtcctggtaatcctccttca
cttgagaaggctaaggatctcttcgcagagaagttttacgatgtcaatcgatatcggctt
ggtcgagttggacgctttcgtatcaaccgcaagttcaatcaggatattcctgatgacgaa
atgactttgcgttccgaggatatggtcaacgctgttcgttatcttgttttactacgtatg
gatgatgattcagcttacgttgatgatatcgataatctcggtaaccgacgtttgcggact
attgatgaattggggatggatgaaatccgtaaaggttttctgaaacttcggcgaactgtt
caggagcgaatgagcctgaaagatgttgaagaaatgagtccgcgtactttggtcaatccg
aagtctgtttcagcggccattgattatttctttgggcgaagtgaactttcgcaggtggtc
gaccagacgaatccactttcgatgctcacacacgagcgtcgattaagtgcacttggtcca
ggtggtttgaatcgtaagcgtgcaggctttgaagttcgcgacgtacatatttcgcactac
ggtcgaatttgtccgattgaaactcctgaaggtacaaacattggtctgatttccagtttg
agtatcttctcgaaagttgatgactacggatttttgatcactccatatcgtaaggtttcg
aatggaaaagtgattgatgaaatcatgtggttgcgtgctgatgaagaagcgagtgtgcac
gttgctcctgctgatacgcgtgtcgaaaatggcgtgattattgacgagcgcgtcttgtcg
cgttatcgcagtgatgttcactggattcccgccatggatgtggaattcatcgatgtggca
ccttgccaaatggtgggtgtctctgctgggttgattcctttccttgagcacgatgatgcg
aaccgtgcgttgatggggtcaaacatgcaacgtcaggcggttccgctcttgatcgctgaa
gcgcctttggtcgggactgggatggaggaagagattcctcgttactccggtatggttgtt
cgctcggaccgagcaggaaaagtgacgtatgttgatgcaaacgtcattgaggtcgaaggt
aagaaattccctctgcgaaagtacatggggctgaacgagcgaacatgcttgaatcagaaa
ccgttggtctctgttgggcagaaggttaagaaagaccagattcttgctgacagtgctgcc
acacaagatgggatcttggcactgggacgaaatgttcttgtgggcttcatgtcgtgggaa
gggttcaactttgaagatgcgattattctctctgagcgactcgttaaggatgatgtttac
acttcgattcacattgatgaattcgatgttgagatccgcgagaccaagcttggtcgtgaa
gagttcactcgagatatcccgaacgtgagcgaaaaagctttgcgtcatcttgatgatgac
gggattgttcacgtcggaacgcgggtcaagcagggagatattctggttggtaaagtggtc
cctaaggccaaagcagaattgactcctgaagaaaagttgttgcatgcgatcttcggtaag
gccggagaagatgtgaaaaacgaatctcttgaagtcaatagtggcgttgaggggattgtt
atccaaactgagaagttctctcgcagaatgagtctttctgaggccgatcgaaaagttttc
gacatcgaagtcgcaaagattcaacaagaaggtcaggagaaaattgcagagaagttccag
gagtttgtcgtcgaatttgatgccgccttggggcgtcatctggcagatgatgacggaagg
gaaattcgcagtattgaagatgtgaagtttgtcgctcaatacgcgaaaagtttcgaaagc
catttcgacaaactcgacattcgcagccctcaaaaacaagcggatctgcgtaagctgatg
aatgaacagtggccgttcgtggtggaagtcattgatgaggctgagcaaaacctgaacagc
atgaagcgtggagatgaacttcctaacggcgtgctgcagatggtgaaggtttatgtggcc
tccaaacgacagatttctgtcggggataaaatggctggccgtcacggaaacaagggtgta
atttcaaaagtcttgccagttgaggatatgccttatctggatgacggaacccccatcgac
attattctgaacccacttggtgttccgagtcgtatgaacgtcggtcagattttggaaact
caccttggatgggcagcctcaaaacttggcttccgtgcgatttgcccagttttcgatggt
gccccagaagctgaaattaacgattgtctcaaggaagctggcttgccggaagaaggaaaa
gttcgtctttacgatggacgaaccggcgagcagatggagcagaaaacaactgtcggttac
atctacatgttgaaactgcatcaccttgttgatgacaaagtgcatgcccgtgcaacggga
ccttactcgctcattactcaacaaccgttgggtggaaaagcccgcttcggtggtcagcga
ttcggagagatggaagtttgggcattggaagcctacggagccgcttacatccttcaggaa
ttgctcactgtgaagagtgatgatgttgaaggccgcaccaaaatttacgagtcaatggtt
aagggggaaaacacccttgaggccggaacacccgcaagtttcgatgtgctgaacaacgaa
attcgcggactgtgtttgaacatgcaattggaaaaaactcacacgtaa
DBGET
integrated database retrieval system
