Tenacibaculum polynesiense: T19A14A_0093
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Entry
T19A14A_0093 CDS
T11463
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tpoy Tenacibaculum polynesiense
Pathway
tpoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T19A14A_0093 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpoy03019
]
T19A14A_0093 (rnr)
03016 Transfer RNA biogenesis [BR:
tpoy03016
]
T19A14A_0093 (rnr)
Enzymes [BR:
tpoy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
T19A14A_0093 (rnr)
Messenger RNA biogenesis [BR:
tpoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T19A14A_0093 (rnr)
Transfer RNA biogenesis [BR:
tpoy03016
]
Prokaryotic type
tRNA degradation factors
T19A14A_0093 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAL2108901
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All DBs
Position
T190130A14A:complement(99687..101882)
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AA seq
731 aa
AA seq
DB search
MTRKKKIYKKKGKIIKDLTRNIFKILNENSEKSYNYKQIASKMGISDTDGKTQILQKLVE
LTASKKIVEIDRGKFQINEERNYHIGTLDVTSNGNAYFMSDDFEHDIFVPSVNLNRGLHN
DTVKAYVYTKRKSKKLEADVVEVLNRAKNEFVGTLQMSKNFGFVLPDNQKMYADIFIAKS
KLGDAQHGDKVLAKLTDWPDNSKNPFGKIVQVLGKPGEHNTEIHSILLEYGLPYEFPKEI
EEEASHLPIEITPEEVRKRRDMRGDLTFTIDPKDAKDFDDALSFTKLENGNYEIGIHIAD
VSHYVQPKTKLDEEAYDRATSVYLVDRVVPMLPEMLSNGVCSLRPEEEKLTFSAVFEMNE
KAQIIDQWFGRTVTYSDKRFAYEEAQAIIENKNNIVPKEVSLIDQEYVVDENIVEAILKL
DELAKKLRKRRMKAGAISFDKVEVKFNLDEEANPIGVFFKEAKDANKLIEEFMLLANRKV
AEFIGFKAGKATNKTFVYRVHDEPDIEKLQSLQNIVSKFGYKINTETREKTSDSLNKLLT
DVHGKAEANMVETLAIRSMSKAEYTTQNIGHYGLAFDYYSHFTSPIRRYPDVMTHRLLQH
YLDGGNSPKAEIYEERCKHSSKMEELASKAERDSIKYMQIKYMQDHKDIDFEGVVSGVTE
WGIYVEIKSNKCEGMVRIKDLKDDYYIFDEKQYAAVGQANKNIIQLGDEVVVKVKHTDLE
RKHLDFELISH
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaagaagaaaatttacaagaaaaaaggaaaaataattaaagatttaactaga
aacattttcaagattttaaacgaaaattctgaaaaatcttacaactacaaacaaattgcg
tcgaaaatgggaatttctgatactgatggaaaaacccaaatacttcaaaaactagtagaa
cttacagcttctaaaaaaatagtagagatagatagaggaaagtttcaaattaatgaagaa
agaaattaccatattggtacattggatgtaacttcaaatgggaatgcatattttatgagc
gacgatttcgaacatgatatttttgttccttcagttaatttgaatagaggattacataat
gatactgtaaaagcatatgtttatacaaaaagaaagagtaagaaattagaagcagatgta
gtagaagttttaaacagagctaaaaatgaatttgttggaacactacaaatgagtaagaac
tttggttttgtattaccagataaccaaaaaatgtatgctgatatttttattgcaaaaagt
aaacttggtgatgcgcaacacggtgataaagtcttagctaaactgactgattggcctgat
aattctaaaaatccttttggtaaaattgtacaggtattagggaaaccaggagaacataat
acagagatccattcaattttgttagagtatggcttaccttatgagtttcctaaagaaatt
gaagaagaagcttctcatttaccaatagaaattactccagaagaagttcgtaaaagacgc
gatatgcgtggagatctaacatttacgatagatccaaaagacgcaaaggattttgatgat
gcgttatcttttacaaaattagaaaacggtaactatgaaataggaattcatattgcggat
gtttcgcattatgtgcaacctaaaactaaattggatgaggaggcttatgatagggcaact
tcggtttatttagtagatagagtagttcctatgttgccagaaatgttgagtaatggagtt
tgttcattaagaccagaagaagaaaaattaaccttttctgctgtatttgaaatgaatgaa
aaagcgcaaataattgatcaatggtttggtagaactgtaacttattcagataaacgtttt
gcttatgaagaagcacaagcaattattgaaaataagaacaatatagtacctaaagaagtt
tctttaattgatcaagaatatgtggttgatgaaaatatagtagaagctattttgaaattg
gatgaactagcaaagaagttacgtaagcgacgtatgaaagcaggtgctatttcttttgat
aaggtggaagtaaaattcaatttagatgaagaggcaaatccaataggagtcttttttaaa
gaagccaaagatgctaacaaattgattgaagaatttatgctattagctaatagaaaagta
gctgaatttattggttttaaggctggaaaggctacaaataaaacttttgtatatcgtgtg
catgatgaaccagatattgaaaaattacaatcattacaaaatattgtgagtaagtttggt
tataagattaatactgaaacacgtgagaaaacatctgatagtttaaacaagcttttaact
gatgttcatggaaaggcagaggctaatatggtagaaacgttggctattcgatcaatgagt
aaggcagaatatactacgcagaatattggacattacggattggcttttgattattattca
cactttacatctcccatcagacgttatccagatgtaatgacacatcgattactacaacat
tatttagatggaggaaattcaccaaaagcagaaatttatgaagaacgttgcaaacattct
tctaaaatggaagaattagcatctaaggcagaacgtgattctattaagtatatgcaaatt
aagtatatgcaagatcataaagatattgattttgaaggagttgtttctggtgttactgaa
tggggaatttatgtagagattaaatctaataaatgtgaaggaatggttcgtatcaaagat
ttaaaggatgattactatatttttgatgagaaacaatatgcggcagttggacaagctaat
aagaatattattcaattaggtgatgaagtcgtagttaaggttaagcatactgatttagaa
cgtaagcatttagattttgaattaatttctcattaa
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