Tenacibaculum polynesiense: T19A14A_0862
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Entry
T19A14A_0862 CDS
T11463
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tpoy Tenacibaculum polynesiense
Pathway
tpoy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpoy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T19A14A_0862 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpoy03019
]
T19A14A_0862 (pnp)
03016 Transfer RNA biogenesis [BR:
tpoy03016
]
T19A14A_0862 (pnp)
Enzymes [BR:
tpoy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
T19A14A_0862 (pnp)
Messenger RNA biogenesis [BR:
tpoy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
T19A14A_0862 (pnp)
Transfer RNA biogenesis [BR:
tpoy03016
]
Prokaryotic type
tRNA degradation factors
T19A14A_0862 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
CAL2109654
LinkDB
All DBs
Position
T190130A14A:complement(893435..895600)
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AA seq
721 aa
AA seq
DB search
MIPQVFTQTIDLGDGRTITLETGKLAKQADGSVVVKMGDTMLLATVVSARTANPGIDFLP
LTVDYREKFAAAGRYPGGFMKREARPSNEEILTMRLVDRVLRPLFPKDYHAETQVMIQLM
SHDPEVMPDALAGLAASAAIQLSDIPFEAAISEVRVARVNGEFIVNPSYKQLAEADMDLM
VGASKDFVAMVEGEMDEVSEEEMADAIKVAHEAIKAQCDAQVALAEAFGKKEIREYETEE
TNEELAQKIHDAAYQKCYDIAKKGTSKQERGLAFSEVKDEVMEMFTEEELEEFGDLVGKY
FGKTHKAAVRDLTLNEGLRLDGRKTTDIRPIWCEVDYLPRTHGSSIFTRGETQALATVTL
GTSRDANMLDSPTIQDEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKGMIP
DDCPYTVRVVSEVLESNGSSSMATVCSGTMALMDAGVQMKKPVSGIAMGLISDGERYAVL
SDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILVKALKQARDGRLHILEKLT
DTIDTPNKDVKAHAPKMVTVRIAGEYIGAMIGPGGKHIQELQKETETTIVINEDEATEEG
IVEILGTNQEGIDKVLARIQAITFKPEKGSVYETKVVKILDFGAVVEYTEAPGNEVLLHI
SELAWERTNNVTDVVKMGDIIDVKYFGVDPKTRKEKVSRKALLPRPPRQDKKPKPQENKE
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgattccacaagtatttacccaaacaattgatttgggagatggaagaaccatcacatta
gaaacaggaaaattagcaaagcaagctgatggttcagttgttgtaaaaatgggggacact
atgttacttgctaccgtagtatcagcaagaactgcaaacccaggtatcgactttttacct
ttaacagtagattatagagaaaaatttgctgccgctggtcgttacccaggaggttttatg
aagcgtgaggcacgtccttcaaacgaagagattttaacgatgcgtttagtagaccgtgta
ttgcgtcctttgtttccaaaagattatcacgcagaaactcaagttatgattcaattaatg
tctcatgacccagaagttatgccagatgcattagctggtttagcagcgtctgcagcaatt
caattatcagatattccatttgaagctgctatttctgaagtaagagtagctagagttaat
ggagaattcattgttaacccaagttacaagcaattagcagaagcagatatggaccttatg
gttggagcttctaaagattttgttgcaatggtagaaggggaaatggatgaagtttctgaa
gaagaaatggctgatgctattaaagtagcacacgaagctattaaagcccagtgtgatgct
caagttgctttagcagaagcgtttggtaaaaaagaaattcgtgaatatgaaacagaggaa
actaacgaagagttagctcaaaaaattcacgatgctgcatatcaaaaatgttacgacatc
gctaaaaaaggaacttctaaacaagaaagaggtttagctttttcggaagtaaaagatgaa
gtaatggaaatgtttactgaagaagaattagaagaattcggagatttagtaggtaaatat
tttggtaaaactcacaaagcagctgtaagagatttaacattaaatgaaggattacgttta
gatggacgtaaaactacagatattagacctatttggtgtgaggtagattatttaccacgt
actcatggatcttcaatctttacaagaggagaaacacaagccttagctacagttacttta
ggtacttctagagatgctaacatgcttgattctccaacaattcaagatgaagagcgcttt
tacttacactataacttccctccattttcaacgggtgaggcacgtcctttaagaggtact
tctcgtcgtgaaataggacacggaaatttagctcaaagagctttaaaaggaatgattcct
gacgattgtccatacacagttcgtgttgtttctgaagtattagaatctaatggttcttct
tcaatggcaacagtttgttctggtacaatggcattaatggatgctggtgtacaaatgaag
aagccagtttctggtattgcaatgggattaatttctgatggtgaacgttatgctgtatta
tctgatattttaggtgatgaagatcatttaggagatatggactttaaagttactggtact
gcagatggtattactgcttgtcaaatggatattaagatcaaaggactatcttatgaaatc
ttagtaaaagcattaaaacaagctcgtgatggtcgtttacacatcttagaaaaattaaca
gacacaattgatactccaaataaagacgttaaagcacatgctcctaaaatggttactgta
cgtattgcaggagagtatattggagctatgattggacctggaggtaagcacatccaagag
ttacaaaaggaaacagaaaccactattgtaattaatgaagatgaagctacagaagaaggt
atcgttgaaattttaggaacaaatcaagaaggaatagataaagtattagctagaattcaa
gcaattacttttaaaccagaaaaaggaagtgtatatgaaactaaagttgtaaaaatctta
gatttcggtgctgttgttgagtacaccgaagctccaggaaacgaagttttattacacatc
tctgaattagcatgggaacgtactaacaatgttactgatgttgttaaaatgggagacata
atcgacgtgaagtactttggagtggatccgaagacacgtaaagaaaaggtttctagaaaa
gctttattacctcgtccaccaagacaagataaaaagcctaaaccgcaagaaaacaaagaa
gcataa
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