Tenacibaculum polynesiense: T19A14A_3521
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Entry
T19A14A_3521 CDS
T11463
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tpoy Tenacibaculum polynesiense
Pathway
tpoy03410
Base excision repair
tpoy03430
Mismatch repair
tpoy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T19A14A_3521
03430 Mismatch repair
T19A14A_3521
03440 Homologous recombination
T19A14A_3521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpoy03400
]
T19A14A_3521
DNA repair and recombination proteins [BR:
tpoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
T19A14A_3521
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
T19A14A_3521
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T19A14A_3521
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
TLP-20
DSPc
Suc_Fer-like
Motif
Other DBs
NCBI-ProteinID:
CAL2113451
LinkDB
All DBs
Position
T190130A14A:3753701..3755386
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AA seq
561 aa
AA seq
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MRWTVKPQPDSEIVHLLARELNIDKTLAILLVQRGITSFEEAKKFFRPTLEDLHDPYLMK
DMDLAVERIEKAISQNENILIYGDYDVDGTTSVSLMYSYLKTVYPNIATYIPDRYAEGYG
VSYKGIDFAHDNDFSLIIALDCGIKAIEKVAYAKEKEIDFIICDHHKPGNEIPKATAILN
PKRIDCEYPYKELCGCGVGFKLIQALANSHNQTINDLTAYLDLVATAIAADIVPITGENR
ILTYFGLQVINSTPRNGIKALIYQLDKEELNVTDVVFVIAPRINAAGRMKHGNYAVELLT
EMDFDSAIASASEIEKFNNDRKELDKQITQEALLQIEDNKEEEHFTTVVFDKNWHKGVIG
IVASRLTETYYRPTLVFTKSGDKLAASARSVKGFDVYNALEQCAEFIEQFGGHKYAAGLT
LLPEQYKNFKRKFEEVVKNTIDKDLLIPEIAIDTELSLMNVTPKFYRIIRQMGPFGPQNM
KPTFKTCSVRDNGYGKKVGADQTHLKLNILYGSDRKTYNAIGFGLGKKHPLIQNEFDICY
SIEENHWNGFTSLQLMLKDIQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacagttaagccgcaacccgattcggaaattgtacacttattggctagagag
ttaaacattgataaaaccttagcaattttacttgttcaacgtggtattacttcttttgaa
gaagcgaaaaaattctttcgcccaaccttagaggatttacatgatccgtacctaatgaaa
gatatggatttagctgtagaaagaattgaaaaggcgatatctcaaaatgaaaatatctta
atctatggagattatgatgtagatggaaccacatccgtttctttaatgtattcttattta
aaaaccgtatatcccaatattgcaacatacattcctgatagatatgcagaaggttatggg
gtttcttacaaaggaatagacttcgctcacgacaatgatttttctttaataattgcttta
gactgcggtataaaagccattgaaaaagtagcatacgctaaagaaaaggaaattgatttt
attatttgtgatcatcataaacctggtaatgaaattcccaaagctacggcaattctaaac
ccaaaaagaatagattgcgagtatccttacaaagaactttgtggttgtggagtcgggttt
aaactcatacaagccttagccaattcgcataaccaaaccattaacgatttaacagcgtat
ttagacctagttgccacagcaatagctgctgatattgttcctattacaggagaaaacaga
atacttacctatttcggtttacaggttattaactcaactcctagaaacggtattaaagct
cttatttatcaattagataaagaagaattaaatgttacagatgttgtttttgttatagct
ccaagaattaatgctgctggtagaatgaaacatggaaactatgctgttgagttgctaacc
gaaatggacttcgattctgcaattgcctcggcttcagaaattgaaaagtttaacaatgac
cgtaaagaactagacaaacaaattacacaagaagcattattacaaatagaagacaacaaa
gaggaagaacactttacaactgttgtttttgataaaaattggcacaagggagttattggt
attgttgcctcaagattaacagaaacttactatagacccacacttgttttcactaaaagt
ggcgataaactagcagcctcggctcgatcggtaaaagggtttgatgtatataatgcccta
gaacaatgtgccgagtttattgaacaatttggagggcacaaatatgctgcaggactcacg
ttgcttcccgaacaatacaaaaactttaaacgtaaatttgaagaagttgtaaaaaacacg
attgataaagatttacttatcccagaaatagctatagacactgaattaagcttgatgaat
gtaacacctaaattttacagaatcattagacaaatggggccctttggaccacaaaatatg
aaacctacttttaaaacctgttcagtacgtgacaatggttatggaaaaaaagtcggagcg
gatcaaacgcatctaaagctaaatattttgtatggttctgaccgtaaaacctataacgct
attggttttggactaggaaaaaaacatccattaattcaaaacgaattcgatatttgttat
agcattgaagaaaatcattggaatggttttacatctcttcaacttatgttaaaagacatt
cagtaa
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