Candidatus Tremblaya princeps PCVAL: TCP_140
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Entry
TCP_140 CDS
T01858
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
tpq
Candidatus Tremblaya princeps PCVAL
Brite
KEGG Orthology (KO) [BR:
tpq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TCP_140 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpq03021
]
TCP_140 (rpoD)
Transcription machinery [BR:
tpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TCP_140 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
AEK38483
LinkDB
All DBs
Position
complement(121840..122940)
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AA seq
366 aa
AA seq
DB search
MLQALRASANAVARGSSLARYCIEGLSAGAVRPELFCHAPRHAIAWGSVLARLRSLASTL
HDRIAPQASGIGQGCILWRIGSRITAFKLAPRAVAMLESALRPRVPARWGTCAHCSAATV
CAVVNTIGTRARCLKDEAVSLHMELVRCIARRHASRSMRLGDLIQEGVVGLVRALDRFRC
QGGCQFTTYASWWVRQHVMRASLARQWNGRIPPALYAMLCRIRMVAASIIHRNGHRPTPS
IVAAELGIPAHDAERALLALSAYHGARSMPGAVADLVAGEVQTRSVPAGAKAHCARHVGS
VAAMTVREASILRLRLGAWVGARLTLGDIGRRFGITRERVRQIEARVFKRARRPMLPCCA
RPVAQR
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaagcgcttcgcgcttcggcgaatgccgttgctaggggcagttcactagcacgc
tactgcattgagggcctcagcgcaggcgcagtgcgaccagagctgttctgccatgcacct
aggcatgcgatagcatggggctcagtgcttgctcggctgcgaagcctcgccagcaccctg
cacgaccgcattgcgccacaggcttcggggataggtcaggggtgcatcctttggcgcatc
ggctcccgtatcaccgctttcaagctagccccacgcgcagttgctatgctagagagtgcg
ctgcggcccagagtgccagcgcgctggggcacttgcgcccattgctctgctgcgaccgtt
tgtgccgttgtaaacaccatcggcaccagggccagatgcctaaaagacgaggcagtatcg
ctgcacatggagctggtaaggtgcatagcccgaaggcatgcatcaaggagtatgcgactt
ggcgaccttatccaggagggggttgtggggctagtgagggccttagatcggttcaggtgc
cagggcggctgtcagtttacgacatacgcttcttggtgggtgaggcagcacgtgatgcgc
gcatccctagcgcgccagtggaatggccgaatcccccccgccctgtatgccatgctgtgc
agaataaggatggtagcagcaagcatcatacatcgcaacggacataggcccaccccttct
atcgtggctgccgagcttggcatacctgcacacgatgcagagagagctttgctcgcgctc
tctgcataccatggggcccgttctatgcccggtgccgtggcggacctggttgcgggtgag
gtgcagacacgcagcgtgcctgctggagcgaaggcccactgtgcacgccacgtaggaagc
gtagctgcaatgacggtcagggaggcgtcaatcctgaggctgaggcttggtgcatgggtc
ggagcacggctcacgctaggcgacataggcaggaggttcggcattacacgcgagcgtgta
aggcagatagaggctcgcgtgttcaagagggcacgccggccaatgctgccatgctgcgca
aggcctgtagctcagcggtag
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