Tsukamurella paurometabola: Tpau_0543
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Entry
Tpau_0543 CDS
T01228
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tpr
Tsukamurella paurometabola
Brite
KEGG Orthology (KO) [BR:
tpr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpr03016
]
Tpau_0543
Enzymes [BR:
tpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tpau_0543
Transfer RNA biogenesis [BR:
tpr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tpau_0543
Prokaryotic type
tRNA splicing ligases
Tpau_0543
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADG77183
UniProt:
D5USB6
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All DBs
Position
571798..572964
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AA seq
388 aa
AA seq
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MEKISKSLVSWASILDEKTREQAITTAKLPFIYPHIALMPDAHLGKGATVGSVIPSLGAV
IPAAVGVDIGCGMIAVRTQFTKSDLPDDRATVREAIERAVPLSPGRYNTKVVATAEPRIA
ELIALAERAEFDPAQYAGNWALQLGTLGGGNHFIEISLDEDDTVWAFLHSGSRGVGNKIA
QQHIAVATRLCRQWWIDLPDPDLAYLVEGTPEFRRYIAELKWAQHFALLNREEMMDRVIR
QLGEWVGTPVSEAERINCHHNFTKREKHFGKEVWVSRKGAIEAAEGKLGLIPGSMGTASY
IVEGRGFPPSLNSSPHGAGREYSRSAARRTFTHEQLREAMAGIEFRDSADFVDEIPQAYK
PIDRVMTDAAELVTVRAVLRQIVNVKGQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatcagtaagtccttggtctcgtgggcgtccatcctggacgagaagacccgc
gagcaggcgatcaccacggcgaagctgccgttcatctacccgcacatcgcgttgatgccc
gacgcccacctgggcaagggcgccaccgtcggctcggtcatcccgagcctcggcgccgtc
atccccgcggcggtcggcgtcgacatcggatgcggcatgatcgcggtccgcacccagttc
acgaagtccgaccttccagacgaccgcgcgacggtgcgtgaggccatcgagcgggcggtc
ccgctgtctccgggccgttacaacacgaaggtggtggccacggcggagccgcggatcgcg
gagctgatcgcactcgccgaacgcgcggagttcgatcccgcgcagtacgccgggaactgg
gcgctgcagctgggcaccctcggcggcggaaaccacttcatcgagatcagcctcgacgag
gacgacaccgtgtgggccttcctgcactccggatcccgtggcgtgggcaacaagatcgcc
cagcagcacattgccgtcgcgacccgcctctgcaggcagtggtggatcgatctgccggac
ccggacctggcctacctggtcgaaggcacgcccgagttccgcaggtacatcgccgagctg
aagtgggcgcagcacttcgcgctgctcaaccgcgaggagatgatggaccgggtgatccgg
caactcggggagtgggtgggcacgcccgtctccgaggccgagaggatcaactgccaccac
aacttcaccaagcgggagaagcacttcggcaaggaggtgtgggtatcgaggaagggggcg
atcgaggccgccgagggcaagctcggcctgatcccgggctcgatgggtaccgcgtcctac
atcgtcgagggcaggggcttcccgccgtcgctgaacagctcaccgcacggcgcgggcagg
gagtactcccggtccgcggcgcgcaggacgttcacgcacgagcaactgcgggaggccatg
gccgggatcgagttccgtgatagcgcggacttcgtcgacgagatcccgcaggcgtacaag
ccgatcgacagggtgatgaccgatgcggccgagctggtgacggtgcgcgccgtgctgcgg
cagatcgtcaacgtcaaggggcagtga
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