Trifolium pratense (red clover): 123881429
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Entry
123881429 CDS
T08949
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123881429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123881429
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123881429
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Gene cluster
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
123881429
NCBI-ProteinID:
XP_045786076
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Position
LG4:51258315..51274187
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AA seq
935 aa
AA seq
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MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPSCTVCDTSNARLSASPSTILVLDTNV
VLNQIDLLENPAIDDVVVLSIVLDEVKNKNMSVYNRLRAICNNSMRKFFVFSNEHHRDTY
VKEMSGETKNDRNDRAIRVAAQWYQKHLGGAVKVLLVTNDKENKRKASEEGICAETVESY
VKSLDRPDLLDLLVRPSSEDVDMEEVEDHRPSKRKVIYSEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEITIYGRSNMNRAFDGDIVAVELLPQDQWQGEKSLSIAGE
EDEDEDEEVHLAPNSADVAPRTIPQQGSSREINAGSSRPSGRIVGIIKRNWHSYCGSLEP
MPIPGGNRGVAYALFVSKDRRFPKIRIQTRQLENLLDKRIIVSVDSWDRQSRYPSGHYVR
TIGDIGDRDTESEVVLIENDINSRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVF
SVDPPGCKDIDDALHCYALPNGNFEVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDVCSLRSDVERLAFSVIWEMTPEADIVATRYTKSVIKSAAALSYVEAQAR
MDDSRLMDPVTTDLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRVSAAVGLNLDVS
SSKALADSLDLAVGEDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLATPLYTHF
TSPIRRYADVIVHRLLAASIGISKLPPVFQDRLQLTSISDNLNYRHRNAQMAGRASVELH
TLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTTRAEKGSGEWYVDEQEQKIK
KMDGSISYSILQTVQIHMEVVEPQPNRPKLQLTLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgcttcacaacaagtccttcgttaagaaaaccaaaggtggcaaagtcatgaagcaagtg
agggaacactacctgcgagatgatatatattgtggtgctccgtcttgcactgtttgtgat
acttctaatgctagacttagtgcttctccttccacaattcttgttcttgacaccaatgtt
gttcttaatcagattgatttgcttgagaatccggccattgatgatgttgttgtattgtcc
attgtgttggacgaggttaagaacaagaatatgtctgtttataaccggttaagggctatc
tgtaacaattcaatgaggaaattctttgttttttccaatgagcaccacagggatacatat
gttaaggaaatgagtggggaaactaaaaatgacaggaacgatagagctattcgagtggct
gcacagtggtaccagaagcatctaggtggtgcagtaaaggttttgctcgtaactaatgat
aaagagaacaaaaggaaggctagtgaagagggcatttgcgcagaaacagttgagtcatat
gtcaagtctttggaccgacctgatttacttgacctgctggtgcggccttcatctgaagat
gtggatatggaagaggtagaagatcacagaccatccaagaggaaagtgatttattcagag
cataagccaatgtcagaaattacatctggtttgcatcgtggaatatatcatcaagggaaa
ttacgtgtaaaccgttacaatccattcgaagcatatgttgggagtgagagtattggtgat
gaaataaccatttatgggcgctctaatatgaaccgagcttttgatggtgatattgtggca
gttgaacttctgcctcaggaccaatggcaaggggagaagtctctatctatagcaggtgaa
gaagatgaggatgaggatgaagaagttcatctagccccaaatagtgctgatgttgcaccc
agaactattcctcagcaaggttcttctagagaaataaacgccggatctagtcgcccttct
ggtcgtattgttggtattattaagagaaactggcactcgtattgtggatctttggagcca
atgcctattcctggagggaatcgtggtgttgcctatgccttgtttgtctccaaagatcgc
agatttcccaagattcgtatccaaacccggcagcttgagaaccttttggacaaaaggatt
attgtatcagttgattcttgggatcgtcaatctcgatatccatctggccattatgtgcgg
actataggagatataggtgatagagatactgaaagtgaggtggttttgatagaaaatgat
ataaattcaaggccattctctgcacaagtgctagcatgcttgccaccattgccatggtca
gtctcttctgaagatttgtctattccatttaggcaggatttgcgtcatttgcgtgtattc
agtgtggaccctccaggctgcaaggatattgacgatgcactccactgctatgctctacca
aatggaaactttgaagttggagttcatattgccgatgtgacaaattttgtgtttcctggc
actccacttgacgacgaggcttctcaaaggggtacatctgtctaccttgttgaacgaaga
atagacatgcttccaaagcctttaacggaagatgtatgctctcttcggtctgacgtggaa
aggctagcattctctgtcatatgggaaatgacacctgaagcagacattgttgccaccaga
tacacaaaaagtgtcataaaatctgctgcagcattgtcttatgttgaagcacaggcgagg
atggatgatagtcgattgatggatccagtaactactgacttgagaaatatgaatagttta
gcgaagaaaatgagattaaggcgtattgagagaggagctttgactcttgcatctgcagaa
gtcaaatttcaaattgacacagagactcatgatccccttgatattggcatgtaccagatc
agggaagccaatcaaatggtggaagagtttatgcttgctgctaatgtttctgttgcgcaa
caaattcttaaaagttttcctttgtgttcgttattaaggcggcatccaactccaactaga
gagatgcttgaacccttgctacgtgtttctgctgcggttggcctgaacttggatgtctca
tcatcaaaagcattggctgattctcttgaccttgctgtgggtgaagatccatacttcaac
aagttgatccgcattctggcaactagatgcatgagtcaggcagtttatttctgtagtggg
gatcttagccctccagaatatcatcattatgggcttgcaacacctttatatacccatttc
acatcacctataagaagatatgcagatgtcattgtacacagactacttgctgcttctata
ggaatatccaagttacctcctgtatttcaagataggctgcagctcaccagtatttcagac
aatttaaattacaggcacaggaatgctcagatggcagggcgggcctctgtagagctgcat
actctcatttatttccggaagaggccaacagatacggaggctagaatagtaaagataaga
tctaatggatttttcgtatttgtgcccaaatacggcatagaaggacctgtatatttgaca
acaagagctgaaaagggcagtggagaatggtatgtagatgaacaagagcaaaagattaaa
aagatggatggtagcatttcatacagtattttacagacagtacaaattcacatggaggtt
gtggagcctcagcctaatcggccaaagcttcagcttactctcatttag
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