Trifolium pratense (red clover): 123881581
Help
Entry
123881581 CDS
T08949
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123881581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123881581
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
123881581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_WDR75_1st
PRP4
Beta-prop_EIPR1
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_RIG_2nd
eIF2A
Beta-prop_SCAP
WD_LRWD1
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
123881581
NCBI-ProteinID:
XP_045786256
LinkDB
All DBs
Position
LG4:47200812..47205277
Genome browser
AA seq
574 aa
AA seq
DB search
MDVEMENSTLSVTGESSIAASDVQDQNPISSVQPTLPQPTQPVISTVITPVVPPLAPIPT
VPSSLVRPLAPLPIRPPVTRPPVPQNGEADSSDSDSDGDDADTRINKGTGEYEISEESKL
ARERQEKVVQDLMMKRRGAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMA
KLDADGQLEKLMKALEDEEAATSAPKDETEDDQEYPFYTEGSKSLLNARIDIAKYSLVRA
AMRIQRAQRRRDDPDEDVNAEMDWTLKQAANLNLEVSEIGDDRPLTGCSFSRDGKRIATC
SLTGASKLWSMPNVQKVSTFKGHTERATDVAYSPLHNHLATASADRTAKYWNDQGSLLRT
FEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVEKGEELLLQEGHSRSVYGLAFHHDGS
LAASCGMDALARVWDLRTGKSVLALEGHVKPIHGISFSPNGYHLATGGEDNTCRIWDMRK
KKSLYTIPAHSNLISQVKFEPQEGYFLVTASFDMTAKVWSGRDFKPVKTLSGHENKVSSL
DVFGDGGYIVTVSHDRTIKLWTSSTTSEHAMDVD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggagatggaaaattcaacattgagtgttactggtgaatcgtctatagctgct
tctgatgttcaagatcaaaaccctatatcttctgttcaaccaactttgccccagccaact
caacctgttatttcaacagttattactcctgtcgtgcctcctctggctccaattcccaca
gttccttcctctcttgtccggcctctggcaccgctcccaattcggcccccagttactagg
ccaccagtgcctcaaaatggcgaggctgattctagtgattctgattcggacggcgatgat
gcagacaccagaattaataagggcaccggggagtatgaaatatcagaagagagtaaattg
gcgagggagcggcaggagaaagtggtgcaagacctcatgatgaagaggcgtggtgctgct
cttgctgttcccacgaatgacatggcagtgagggcccgtcttcgccatcttggtgagccg
attactctctttggtgagagggagatggagagacgagataggttgcggatgattatggca
aagctggatgctgacggtcagctggaaaagctaatgaaagctcttgaggatgaagaggcc
gcaacttctgctcctaaagatgagactgaggatgatcaagagtatcctttttacactgaa
gggtcaaagtccctcctcaatgcaaggattgatattgctaaatattctttagtaagggct
gcaatgcgtattcaacgtgcccaaagaagaagagatgatccggatgaagatgtcaatgca
gagatggattggacattgaagcaggcagcgaatttgaatcttgaggtcagtgaaatcgga
gatgatcggccacttactggttgctcgttctcccgggatggaaaaaggattgctacctgt
tctctaactggagcttccaagttgtggagcatgcctaatgtacaaaaagtttctaccttt
aaggggcacaccgagcgtgctactgatgttgcttattctcctttgcacaatcatttagca
actgcctctgctgacaggacagcaaagtattggaatgatcaaggatcacttttgagaaca
tttgagggtcatcttgatcgtcttgcacgcattgccttccatccgtcagggaagtacttg
ggcactgctagctttgacaagacatggagattatgggacgttgaaaaaggagaggagttg
cttcttcaagaaggccacagtagaagtgtgtatggtttagcttttcatcatgatggatcg
ttagctgcgtcttgtggaatggatgctctggctcgtgtatgggaccttcgtactgggaaa
agtgttcttgcactagaaggtcatgtcaaaccgattcatggcatcagtttttctcctaat
ggatatcatttagccactggtggtgaagataacacttgtcgcatttgggacatgcgtaaa
aagaaatccttgtacaccattcccgctcactctaatttaatatcacaagtcaagtttgag
ccacaggagggttactttttggtaactgcctcatttgacatgacagccaaggtttggtca
ggccgggattttaagcctgtgaagacactatcagggcatgaaaataaagtttcttctctg
gatgtttttggagatggtgggtatattgttactgtctcccatgatcgcaccataaagctg
tggaccagcagcactactagtgagcatgctatggatgttgactaa
DBGET
integrated database retrieval system
