Trifolium pratense (red clover): 123881802
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Entry
123881802 CDS
T08949
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03420
Nucleotide excision repair
tpra04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123881802
09124 Replication and repair
03420 Nucleotide excision repair
123881802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123881802
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123881802
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
123881802
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
123881802
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EIPR1
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EML_2
EIF3I
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Myco_haema
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
123881802
NCBI-ProteinID:
XP_045786499
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Position
LG4:29738961..29744324
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AA seq
560 aa
AA seq
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MAPVTRRTSFPKVVIERDSDSEQSSSDEEQEEDETLEEEQEQEEENGVIENAKIEKLEVG
FDANRKGKQPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKIPGHTTLNCPHR
VTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKYMIPDQVNCAVIRYHSRRVTTLE
FHPTKNNILLSGDKKGQLGVWDFEKVHEKVVYGNIHSCIVNNMRFNPTNDCMVYSASSDG
TVSCTDLETGISSSPMNLNPDGWQGPNTWKMLYGMDINYEKGLVLVADSFGFLHLVDMRS
NHRNGDAVLIHKKGSKVTGIHCNPIQPDILLTCGNDHYARIWDMRRLEAGSSLCSLEHKR
VVNSAYFSPISGNKILTTSQDNRLRIWDSIFGNMESPSREIVHSHDFNRHLTPFKAEWDP
KDPSESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDI
LATGSSRSLFIWKPKERSEPVEEKDERKIVVCGKAEKKRGRKKVDNSDESDDDGFISKLK
KPKLKQTEWKLSRCSKKDNR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggttactcgtagaacctcattccccaaagttgtcattgaaagagactctgac
tcagaacagagttcctctgatgaagaacaagaagaagatgaaacacttgaagaagaacaa
gaacaagaagaagaaaatggggttattgaaaatgcaaagatcgagaaacttgaagtgggt
tttgatgctaatcgaaaagggaaacaacccattactttaactctcagaaaagtttgcaag
gtgtgtaagaagcctggtcatgaagcaggatttaagggtgctacttatattgattgccca
atgaaaccttgttttctttgtaaaatacctgggcacaccactttgaattgtccacatcgg
gtcactactgagcatggtgttgttccagcaccccgcagaaaaacatctaaacctttggag
tacgtgtttgaacgccagctaagacatgccattcctacaatcaagcccaaatatatgatc
ccagaccaagtgaattgcgctgttatcagatatcatagtagacgggtaacaaccttggag
ttccaccccacgaagaataacatcttgttatcaggagataagaaaggacaacttggagtc
tgggatttcgaaaaagtacacgagaaagtagtctatggtaacatacattcgtgtatagtg
aataacatgaggtttaatcctacaaatgattgtatggtctattctgcgtcgtcagatgga
actgttagttgtactgacttggagactggaatatcatcctctccgatgaacctgaatcct
gatggatggcagggtccaaatacctggaaaatgctgtatggcatggatattaactatgag
aaaggtcttgtgcttgttgccgatagctttggttttcttcacttggtcgacatgcggtcc
aaccacaggaatggcgatgcagttttgatccataaaaagggtagcaaagttactggaatt
cattgcaatccaattcaaccggacatccttttgacttgtggcaatgatcattacgcacgt
atttgggatatgcgtcgcttagaagctggatcatccctctgtagccttgagcacaagcgt
gttgttaactctgcatatttctctccaatatctggaaacaaaattcttactacatcacag
gacaatcgtcttcgtatatgggattctatctttggtaatatggaatctcctagtcgagaa
attgtgcatagtcatgatttcaatcgccatttaacccccttcaaagctgaatgggatcca
aaggatccgtcagagtcacttgccgttgttggccgttacataagtgaaaattttaatggc
acagccctgcatcctattgattttatagatacaagtacagggcagttggtagcggaagtg
atggacccgaacatcacaaccatcagtccagtgaataagctgcatccacgtgatgatatc
ctggcaactgggagttctagatctctattcatttggaagcccaaggagagatccgagcca
gtcgaggagaaggatgaaaggaaaattgtggtttgtggaaaagccgagaagaaacgtggt
aggaaaaaagttgataatagcgatgaatccgatgatgatggattcatttcaaagctgaag
aagcccaagttgaagcagactgagtggaaattgtcgcgctgctcgaaaaaggataatcgc
taa
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