KEGG   Trifolium pratense (red clover): 123881802
Entry
123881802         CDS       T08949                                 
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
  KO
K10140  DNA damage-binding protein 2
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03420  Nucleotide excision repair
tpra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    123881802
  09124 Replication and repair
   03420 Nucleotide excision repair
    123881802
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tpra04121]
    123881802
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123881802
Ubiquitin system [BR:tpra04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     123881802
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      123881802
SSDB
Motif
Pfam: Beta-prop_EIPR1 WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_RIG_2nd WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_EML_2 EIF3I Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 WD_LRWD1 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF4 Myco_haema Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 123881802
NCBI-ProteinID: XP_045786499
LinkDB
Position
LG4:29738961..29744324
AA seq 560 aa
MAPVTRRTSFPKVVIERDSDSEQSSSDEEQEEDETLEEEQEQEEENGVIENAKIEKLEVG
FDANRKGKQPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKIPGHTTLNCPHR
VTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKYMIPDQVNCAVIRYHSRRVTTLE
FHPTKNNILLSGDKKGQLGVWDFEKVHEKVVYGNIHSCIVNNMRFNPTNDCMVYSASSDG
TVSCTDLETGISSSPMNLNPDGWQGPNTWKMLYGMDINYEKGLVLVADSFGFLHLVDMRS
NHRNGDAVLIHKKGSKVTGIHCNPIQPDILLTCGNDHYARIWDMRRLEAGSSLCSLEHKR
VVNSAYFSPISGNKILTTSQDNRLRIWDSIFGNMESPSREIVHSHDFNRHLTPFKAEWDP
KDPSESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDI
LATGSSRSLFIWKPKERSEPVEEKDERKIVVCGKAEKKRGRKKVDNSDESDDDGFISKLK
KPKLKQTEWKLSRCSKKDNR
NT seq 1683 nt   +upstreamnt  +downstreamnt
atggcaccggttactcgtagaacctcattccccaaagttgtcattgaaagagactctgac
tcagaacagagttcctctgatgaagaacaagaagaagatgaaacacttgaagaagaacaa
gaacaagaagaagaaaatggggttattgaaaatgcaaagatcgagaaacttgaagtgggt
tttgatgctaatcgaaaagggaaacaacccattactttaactctcagaaaagtttgcaag
gtgtgtaagaagcctggtcatgaagcaggatttaagggtgctacttatattgattgccca
atgaaaccttgttttctttgtaaaatacctgggcacaccactttgaattgtccacatcgg
gtcactactgagcatggtgttgttccagcaccccgcagaaaaacatctaaacctttggag
tacgtgtttgaacgccagctaagacatgccattcctacaatcaagcccaaatatatgatc
ccagaccaagtgaattgcgctgttatcagatatcatagtagacgggtaacaaccttggag
ttccaccccacgaagaataacatcttgttatcaggagataagaaaggacaacttggagtc
tgggatttcgaaaaagtacacgagaaagtagtctatggtaacatacattcgtgtatagtg
aataacatgaggtttaatcctacaaatgattgtatggtctattctgcgtcgtcagatgga
actgttagttgtactgacttggagactggaatatcatcctctccgatgaacctgaatcct
gatggatggcagggtccaaatacctggaaaatgctgtatggcatggatattaactatgag
aaaggtcttgtgcttgttgccgatagctttggttttcttcacttggtcgacatgcggtcc
aaccacaggaatggcgatgcagttttgatccataaaaagggtagcaaagttactggaatt
cattgcaatccaattcaaccggacatccttttgacttgtggcaatgatcattacgcacgt
atttgggatatgcgtcgcttagaagctggatcatccctctgtagccttgagcacaagcgt
gttgttaactctgcatatttctctccaatatctggaaacaaaattcttactacatcacag
gacaatcgtcttcgtatatgggattctatctttggtaatatggaatctcctagtcgagaa
attgtgcatagtcatgatttcaatcgccatttaacccccttcaaagctgaatgggatcca
aaggatccgtcagagtcacttgccgttgttggccgttacataagtgaaaattttaatggc
acagccctgcatcctattgattttatagatacaagtacagggcagttggtagcggaagtg
atggacccgaacatcacaaccatcagtccagtgaataagctgcatccacgtgatgatatc
ctggcaactgggagttctagatctctattcatttggaagcccaaggagagatccgagcca
gtcgaggagaaggatgaaaggaaaattgtggtttgtggaaaagccgagaagaaacgtggt
aggaaaaaagttgataatagcgatgaatccgatgatgatggattcatttcaaagctgaag
aagcccaagttgaagcagactgagtggaaattgtcgcgctgctcgaaaaaggataatcgc
taa

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