Trifolium pratense (red clover): 123881966
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Entry
123881966 CDS
T08949
Name
(RefSeq) vacuolar sorting protein 39-like
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123881966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123881966
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
123881966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
zf-HC5HC2H
AlaDh_PNT_N
zf-HC5HC2H_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
123881966
NCBI-ProteinID:
XP_045786696
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Position
LG4:48604840..48613520
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AA seq
983 aa
AA seq
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MVHSAYDSFELLTNSPSKIESIESYASKILLGCTDGSLLVYAPASEEMRNETYTLERNLK
GFARRPVISMLVVESRELLLSLSESIAFHKLSTFQTIAVITKAKGAHAFCWDEQRGLLCF
ARQKRVCIFRHDGGRGFVEMKDFGVPDVVKSMSWCGVNICLGIRKEYVILNATNGAISEV
FTSGRIAPPLVVSLPSGELLLGKENIGVIVDQNGKLRPDGRICWSEAPSEVVIQKPYALA
LLPRFVEIRSLRAPYPLIQTIVFRNIRHLRQSHNSVIIALENSVHGLFPVPVGAQIVQLT
AAGNFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNDSYEESMEHFLASQVDITH
VLSLYTSIILPKTTIVHDPDKLDIFGDAMPLSRGSSAMSDDMEPSPELDDNAELESKKMS
HNMLMALIKYLQKKRPSIIEKATAEVTEEVVFDAVGNNFASNNSNRFKKINKGRGSAPVS
SGAREMASVLDTALLQALLLTGQPSMAENLLRGLNYCDLKICEEMLQEGSYHVALVELYK
CNSMHREALELIDKLVKESKSSQSKIVHRFNPEAIIEYLKPLCETDPTLALEYSMLVLES
CPTQTIQLFLSGNIPADMVNLYLKQHAPNLQATYLELVLSTNEDAVSGTLQNEMVHIYLS
EVLDWHADLSSQHQWDEKVYSPKRKKLLSALESISGYNPETLLKLLPSDALYEERAILFG
KMNQHELALSLYVHKLHVPELALSYCDHVYDSTHKPSVKSPSNIYLMLLQIYLNPRRTTV
NYEKKISNILSPQSKSLRRVASKSLSRTRSRGSRKIAAIEIAEDTKTSLTSDSGRSDADM
DEFIEEGSTSIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPFLGPLVRKSSEMY
RNCSIVRSLRQSENLQVKDELYSKRKEVIKISGDNMCSLCNKKIGTSVFAVYPNGKTLVH
FVCFRDSQSMKAVAKGSPCKKAF
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggttcacagtgcctacgattccttcgagcttctcacaaattctccatccaaaatcgaa
tccatcgaatcctacgcttctaaaatcctcttaggatgcactgacggatctctcctcgtt
tacgcgccggcatcggaggaaatgcggaatgaaacatatacattagagagaaacctaaaa
ggatttgcgagaaggcctgtgatttcaatgctggtggtggaatcgagagagcttcttctc
tcgctatcggaatccatcgcgtttcataagctttctacatttcaaaccattgctgttatt
actaaggcgaaaggtgctcatgctttttgctgggatgaacagagaggtttattgtgcttt
gctagacagaagcgagtgtgtatctttagacacgacggtggtagagggtttgtggagatg
aaagactttggtgttcctgatgtggtgaagtcaatgagttggtgtggtgtgaatatatgt
ctggggattagaaaagagtatgtgattctgaatgctacaaatggtgcaatatctgaagtt
tttacttctgggaggatagcaccacctttggtggtatcacttccttctggagagctcctt
ctgggcaaggagaatattggtgtcattgtggaccaaaatggaaaacttcgtccagatggt
aggatttgttggtcagaggccccatcagaagtcgtaattcagaagccatatgctttagcc
ctgctgccaagatttgtggagattcgatctctccgagctccatatccattgatacaaaca
atagtttttcgaaacattcgccatcttcgccagagccataactcagtgatcattgcttta
gaaaattctgtgcatggcctctttcctgttcctgttggagcccagattgtccaattaaca
gccgcaggtaactttgaagaagctttgtcattgtgcaagctccttccacccgaagattca
aatcttcgtgctgcaaaggagggttcaattcatataagatatgcccactatctttttgac
aacgacagctatgaggagtcaatggagcatttcctagcatctcaagtagatataactcat
gtgctttctctgtacacatccattatccttccgaagacaactattgttcatgatccagat
aaattggacatttttggggatgctatgcctctctccagaggttcttcggctatgtctgat
gatatggaaccctctccagaattggatgacaatgcagaacttgaatcaaaaaaaatgagc
cataatatgcttatggctctcataaaatatttgcagaagaagagacctagtattattgag
aaggccacagcagaagtaactgaggaagttgtttttgatgcagttggtaataactttgca
tccaataacagtaataggtttaagaaaataaacaaggggcgtggtagtgcacctgttagt
tcgggagctcgggagatggcttcagtattggatactgctctactccaagcattgcttcta
actggacaaccttctatggctgaaaatttgttgagaggtcttaactactgtgatttgaaa
atatgtgaagagatgcttcaagaaggcagttatcatgttgctttagtagaactttacaag
tgcaactccatgcaccgggaagcccttgaacttattgataaattggtgaaagaatcaaag
tctagccaatctaagattgtacatagattcaatcccgaggccatcatcgagtacctcaag
ccactttgtgaaacagacccaacacttgctctagagtactccatgcttgttcttgaaagc
tgcccaacccaaactatacagctctttttgtctggaaatattccagcagatatggttaac
ttatatttgaagcaacatgctccaaacttgcaagccacatacttggagctcgtgctttca
acgaatgaggatgctgtctctggaacattgcaaaatgaaatggtacatatctatctttct
gaagtacttgattggcatgctgatttaagttctcaacatcaatgggacgaaaaggtttat
tcccctaaaaggaaaaaattattgtctgccttggagagtatatcaggatataatccagaa
actctgcttaaacttcttccgtcagatgctttatacgaagagcgggcaatattgtttgga
aaaatgaaccagcatgaactagcattatctttgtatgttcataagcttcatgttccagaa
ctggcattgtcatattgtgatcatgtgtatgattctacccataagccttctgtaaaatct
cccagcaacatatacttgatgcttctgcaaatctatttgaatccacggaggacgactgtg
aactatgaaaagaaaatttcaaatatattatccccacagagtaaatcccttcgaagggtt
gcttcaaaatcattatcaagaactagaagtcgaggatcaaggaaaattgctgcaatagag
attgcagaggacacaaaaactagtctgactagcgacagtggtaggagtgatgctgacatg
gatgaatttattgaggaaggaagtacttctatcatgcttgatgaggccctcgatttgtta
agtcgcaggtgggatagaatcaatggagcccaagcccttaaactcctaccaaaagagacc
aaattgcagaacttgcttccatttcttggaccccttgtgagaaaatctagtgaaatgtac
cgtaattgctcaattgtcaggagcttgagacagagtgagaaccttcaggtgaaagatgaa
ctctacagtaagagaaaagaagttataaagattagtggtgataacatgtgctccttgtgc
aataagaaaatagggactagtgtttttgcagtttatccgaatgggaaaactctagtgcat
tttgtctgtttcagagattctcaaagtatgaaagctgtcgccaaagggtctccgtgcaaa
aaggcattttaa
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