Trifolium pratense (red clover): 123881968
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Entry
123881968 CDS
T08949
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tpra03016
]
123881968
Enzymes [BR:
tpra01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
123881968
Transfer RNA biogenesis [BR:
tpra03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
123881968
Prokaryotic type
123881968
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
YpzI
Motif
Other DBs
NCBI-GeneID:
123881968
NCBI-ProteinID:
XP_045786698
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All DBs
Position
LG4:complement(33349458..33354427)
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AA seq
483 aa
AA seq
DB search
MPLTSLPFPLSPIRNPKIPFHLLPPKTFFKCFCSSTAHPLPSLSPDKWEPFLKKKVVMRV
GYVGTDFRGLQIQRNEHKLSTIEKELETAIFKVGGIRESNFGDLDKIKWGRSSRTDKGVH
SLSTMISFKMEIPENAWKGDDHGIAMANLINSYLPNSIRVFSVLPSTKRFDPRQECNLRK
YSYLLPADIIGIQSHFSEDEIDFHISEFNSILGVFEGDHPFHNYTVRSVYRKKQTARKSP
GNSGMSNRTGSSSLVLAHDSETEESDVDDSLHDDGTTLLNNGEQSNKSPASSESNSSGVS
ARWLHEPDEADRLNASHYRKVVHCSCGKLETLLGYNYVEINVWGNSFMLHQIRKMVGTAV
AVKRKLIPRDIFLLSLIKFSRIVLPIAPPEVLILKGNTFRMRSGGGSYTRPEMVSMVESE
QILKAVDEFYTSVMLPELSKFLDSSKSPWANWVDKLDTYSSIPDDQLEEIREAWESWRWM
HYT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccattaacttctctaccattcccactctctccaattcgaaaccctaaaatcccattt
catcttcttcctccaaaaacattcttcaaatgcttctgttcttccactgctcaccctctt
ccttctctctcccctgacaaatgggaaccttttctcaagaaaaaagtcgttatgagagtt
ggatacgttggaaccgattttagaggtctgcaaattcaacggaatgaacacaaattatcc
actattgaaaaagaacttgaaactgctatcttcaaggttggtggcatccgtgaaagtaat
tttggtgatctggataagattaaatggggccgaagtagcagaaccgataaaggagtccac
tctctgtcaacaatgatatcctttaagatggaaatccctgagaatgcatggaaaggagat
gatcatggcattgcaatggcaaacctcatcaattcttatcttcctaatagtatccgagtt
tttagtgtattgccttcaacaaaaagattcgatcctagacaagagtgcaatctgcggaaa
tattcttacctcctccctgctgatataatcggaatccagagtcattttagcgaggatgaa
atagattttcacatttctgagttcaacagcatacttggtgttttcgagggagatcatcct
ttccataattatactgttcggtctgtatacaggaaaaaacagactgcaagaaaatcacca
ggaaatagtggcatgtcgaacagaacaggatcatcaagtttggtattagctcatgattca
gagactgaggaaagtgatgttgatgattctttgcatgatgatgggaccacccttttaaat
aatggggaacagagcaataagtctccagcgtctagtgaatccaatagttcaggagttagc
gcaagatggttgcatgaacccgatgaggcagatagattaaatgcttctcattacagaaag
gttgtacattgttcctgtgggaagttggagacacttcttggatataactatgttgagatc
aatgtatgggggaattccttcatgttacatcaaatacgcaagatggttgggactgctgtg
gctgtaaagcgcaagttaataccaagggacatctttttattgtcactcatcaaattttct
cgaatagtcctccctattgccccaccagaagtgttgattttgaaaggaaatactttcaga
atgagatcaggtggtggaagctacacaaggcctgaaatggtatcgatggttgaatcagaa
caaattcttaaagctgttgacgagttctacacatcggttatgttgcctgaattgtcaaaa
ttcctggactcctcaaaatctccttgggcgaattgggtcgacaaattggatacatattca
agcattccagatgatcaattggaggaaattagagaggcttgggaaagctggcgttggatg
cattatacatga
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